Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3441 ATGGTGAGTGAGTGGAAAAAACTTATGCTTTTTTTGTGTTCAAACTCTGGTAGAAACAGGGTTGAAGGCCAATTTGTTGAGGAAACAATTCCTAATGAGTATTCTATTCAGTTTCCAAGCGTTAACTTGGAGTCATGTGTGATAAACTCTCTTCCGGTGTCTCAGTTTAAGAAAGATGAGGTTGAGGGGGAACATATGCCAGTTAATGCGGACTGTGCCATTTGTTTGGGAGAATTTGAAGAAGGGGAATGGCTCAAACTTCTTCCTAATTGCACCCACGGCTTCCATGCTTCCTGCATTGACACCTGGTTTCGCTCTCATTCTAATTGCCCTCTTTGCAGAGCTTATGTTAGTCACGCTGACACACAAGAGTGTTCTGTTTCTTTGTACACGCTGCTAGAAACTTCCAGGAGCCAAGACTTCTCCACTGAAACCACTGCGTATTTCCAATCCCCTGAAAATTTGGAGATCACACATCACTCCTGTCCTGATTAA 495 0.4303 MVSEWKKLMLFLCSNSGRNRVEGQFVEETIPNEYSIQFPSVNLESCVINSLPVSQFKKDEVEGEHMPVNADCAICLGEFEEGEWLKLLPNCTHGFHASCIDTWFRSHSNCPLCRAYVSHADTQECSVSLYTLLETSRSQDFSTETTAYFQSPENLEITHHSCPD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3441 164 CDD RING-H2_PA-TM-RING 71 114 - -
Gso11g3441 164 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Gso11g3441 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 125 IPR013083 -
Gso11g3441 164 Pfam Ring finger domain 71 114 IPR001841 -
Gso11g3441 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 126 IPR044675 -
Gso11g3441 164 SMART ring_2 72 113 IPR001841 -
Gso11g3441 164 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 32 126 - -
Gso11g3441 164 SUPERFAMILY RING/U-box 55 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3441 Gso-Chr11 50356880 50357374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3441 37 117 C3H Transcription Factor Family AT5G10380 54.321 4.88e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3441 - - gmx:102660592 350.517