LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g3440	ATGGCTCCCAAAGCTGATAGTTCAAAGAAGGCTGATCCAAAGGCACAGGCCTTGAAAACTGCCAAGGCAGTTAAGTCCGGTGCTAACTTTAAGAAGAAGACCAAGAAGATCCGAACATCTGTTACCTTCCATCGACCAAGGACTTTGAAAAAGGATAGGAACCCCAAATATCCACGCATTAGTGCTCCACCCAGGAACAAGCTTGATCACTATCAGATATTGAAGTTTCCTCTCACGACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAA	462	0.4416	MAPKADSSKKADPKAQALKTAKAVKSGANFKKKTKKIRTSVTFHRPRTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g3440	153	ProSitePatterns	Ribosomal protein L23 signature.	131	146	IPR001014	-
	Gso11g3440	153	TIGRFAM	uL23_arch: ribosomal protein uL23	77	153	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g3440	153	Gene3D	-	34	153	IPR012677	-
	Gso11g3440	153	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	70	146	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g3440	153	Pfam	Ribosomal protein L23, N-terminal domain	14	63	IPR005633	-
	Gso11g3440	153	PANTHER	60S RIBOSOMAL PROTEIN L23A-2	1	153	-	-
	Gso11g3440	153	MobiDBLite	consensus disorder prediction	1	16	-	-
	Gso11g3440	153	MobiDBLite	consensus disorder prediction	26	44	-	-
	Gso11g3440	153	MobiDBLite	consensus disorder prediction	1	64	-	-
	Gso11g3440	153	PANTHER	60S RIBOSOMAL PROTEIN L23A	1	153	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g3440	153	Pfam	Ribosomal protein L23	73	135	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g3440	153	Hamap	50S ribosomal protein L23 [rplW].	73	153	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g3440	Gso-Chr11	50353923	50355445	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g3440	1	153	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	86.364	2.72e-67	199

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g3440	K02893		-	gmx:100778548	286.574

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso15g0364	15	3269448	3270976	Gso11g3440	11	50353923	50355445	GST
	Gso11g3440	11	50353923	50355445	Gso12g0549	12	4925201	4926828	PCT
	Gso11g3440	11	50353923	50355445	Gso11g1214	11	10974512	10976231	PCT
	Gso12g0549	12	4925201	4926828	Gso11g3440	11	50353923	50355445	PCT
	Gso11g1214	11	10974512	10976231	Gso11g3440	11	50353923	50355445	PCT