Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3429 ATGACTGATTATTGGAGAAATATTGGTTTCTTTATATGTGTTTTATCAATCTTCCCCCTTGTATGCTTCTGTGCCACCTTTGTTCCAGTAGATAATTATCTTATAGACTGTGGAGCAACTGCAAGTACTTCAGTAGGTACACGCAATTTCATAGCAGATAACAACAAGGATCTCCTTTCCACACAAGAAGATATTCTTGCCACTACCTCCTTAAAATCAGTTACTTCTTCCTCCGATGATTTGCCTCTCTATCAAACTGCAAGAGTCTTCACTGGATCCTCAAAGTACACTTTTAAAATTAAGCAGAAGGGGAGGCACTGGATCCGTCTCTATTTCTTTCCATCCACTTATGAAAAGTACAATTTGAGTGCTGCAGATTTCACTGTTTCCACCCAAAACCATGTCCTTTTCAGAAGCCTCAACATGCAGAAAGATCCTGTGATGAAGGAGTACTCAGTGAATGTGACCTCAGACACCCTTGTTCTCACTTTTACCCCTTCAGGAAATTCCACTGCTTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCTGATGACCTAATTGTTGATGATGGTTTTGCCTTAGATCCATCAGTAACCTCTTCTGGGTTGGTGACACAAGCACTTGAGACAGTTTGGAGGGTTAACATGGGAGGTCCTACTCTGACCCCTATTAATGACACCCTTCAAAGAACTTGGGTTCCAGATCAAAGTTTCCTTTTGGAACCCAACCTTGCCTCAAATTTTTCCAATATTAAGGGTGTTAAATACGAGAACCGCGGGCAAGCAACAGAAAACACTGCTCCGCCTACCGTTTACGGGACTCTCACACAGATGAATTCAAGCAATGATCCCCGTAGTATTTTCAATGTGACATGGCAGTTTGATGTGAGTCCCGGATTTCAGTACCTTGTTCGACTTCACTTCTGCGATGTAGTCAGTAAAGCTCTCAATGTACTCATCTTCAATGCTTATGTAGACTCCAAGCTCGCTGCCTCCAGTGCTGATCCCAGTACTACTAGCAATAATGCTTTGGGTGTTCCATATTATAGGGATCTGGTTACAGCCGTGGCAGTAAGCAAAACGCTTCGTGTAGGTATTGGTCCTTCAGATCTAAATAAGGATTACCCTAATGCCATTTTGAATGGGCTGGAGATCATGAAAATGAACAATTCTATGGGTAATCTTATACCAGGAGCAGGATCTGTGGCTATTACTTCTGGCTCAAGTTCTAAGAAAACTGGCATGATTGTGGGTGTGAGTGTTGGGGTGGTTGGTGCTGTTGTCTTGGCTGGACTTTTCTTTGTACTATGCAGGAAAAGAAGAAGGTTGGTGCAAAGGCAGTCAAAGACATGGGTTCCTCTATCCATAAATGATGGAACTACTTCTCATACCATGGGAAGTAAATATTCTAATGGCACAACACTGAGTGCTGCTTCAAACTTTGAGTACCGTGTCCCTTTTGTGGCGGTTCAGGAGGCTACAAATAATTTCGATGAGAGTTGGGTTATTGGGATAGGTGGTTTTGGAAAAGTGTACAAGGGAGAGTTGAGTGATGGCACAAAAGTGGCAGTTAAGAGGGGGAATCCACGGTCCCAGCAGGGTCTTGCAGAATTCCGAACTGAAATTGAAATGCTGTCTCAGTTCCGTCATCGCCATCTGGTGTCTTTGATTGGTTATTGTGATGAAAGAAATGAAATGATCTTGATATATGAATATATGGAGAAGGGAACTCTCAAGGGTCATTTATATGGTTCAGGTCTGCCAAGCTTAAGCTGGAAGGAGAGGCTTGAAATATGCATTGGATCAGCTAGAGGGCTTCATTACCTTCACACTGGCTATGCTAAAGCTGTCATTCATCGCGATGTGAAGTCTGCAAATATCCTACTTGATGAGAACCTAATGGCTAAAGTTGCTGATTTTGGATTATCAAAGACGGGGCCTGAAATCGACCAGACACATGTGAGCACAGCTGTCAAAGGTAGTTTTGGGTACCTTGATCCGGAGTATTTCAGGAGGCAACAACTAACAGAAAAGTCAGATGTGTATTCATTTGGGGTAGTTCTGTTTGAAGTTCTTTGCGCAAGGCCCGTCATAGATCCAACACTTCCTAGAGAAATGGTAAACTTGGCGGAATGGGCGTTGAAATGGCAGAAGAAAGGACAGTTGGAGCAAATCATAGATCAAACACTTGCAGGCAAAATCAGACCAGATTCTCTGAGGAAGTTTGGAGAAACTGCTGAGAAATGCTTGGCTGACTATGGTGTGGACAGGCCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCAGTGGTTCAAGGCGACCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCTCAGGTCAACAATTTCAACCAGGATGCAAGTGCTTCGGTTACACAATTTGCAGGCTCAGGCCTCGATGATCTGTCTGGTGTTTCTATGAGTAGGGTGTTCTCACAGTTGGTGAAGTCTGAGGGTAGATAG 2514 0.4336 MTDYWRNIGFFICVLSIFPLVCFCATFVPVDNYLIDCGATASTSVGTRNFIADNNKDLLSTQEDILATTSLKSVTSSSDDLPLYQTARVFTGSSKYTFKIKQKGRHWIRLYFFPSTYEKYNLSAADFTVSTQNHVLFRSLNMQKDPVMKEYSVNVTSDTLVLTFTPSGNSTAFVNAIEVVSVPDDLIVDDGFALDPSVTSSGLVTQALETVWRVNMGGPTLTPINDTLQRTWVPDQSFLLEPNLASNFSNIKGVKYENRGQATENTAPPTVYGTLTQMNSSNDPRSIFNVTWQFDVSPGFQYLVRLHFCDVVSKALNVLIFNAYVDSKLAASSADPSTTSNNALGVPYYRDLVTAVAVSKTLRVGIGPSDLNKDYPNAILNGLEIMKMNNSMGNLIPGAGSVAITSGSSSKKTGMIVGVSVGVVGAVVLAGLFFVLCRKRRRLVQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSAASNFEYRVPFVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKGHLYGSGLPSLSWKERLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWALKWQKKGQLEQIIDQTLAGKIRPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDASASVTQFAGSGLDDLSGVSMSRVFSQLVKSEGR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3429 837 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 19 814 - -
Gso11g3429 837 PIRSF SRK 49 178 IPR024171 GO:0004674
Gso11g3429 837 PIRSF SRK 371 813 IPR024171 GO:0004674
Gso11g3429 837 Gene3D Phosphorylase Kinase; domain 1 459 572 - -
Gso11g3429 837 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3429 837 Gene3D - 32 183 - -
Gso11g3429 837 Gene3D - 206 390 - -
Gso11g3429 837 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Gso11g3429 837 PANTHER OS07G0166700 PROTEIN 19 814 IPR045272 GO:0004714|GO:0006468
Gso11g3429 837 Pfam Protein tyrosine and serine/threonine kinase 502 696 IPR001245 GO:0004672|GO:0006468
Gso11g3429 837 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3429 837 CDD STKc_IRAK 503 768 - -
Gso11g3429 837 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Gso11g3429 837 Pfam Malectin-like domain 35 388 IPR024788 -
Gso11g3429 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Gso11g3429 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3429 Gso-Chr11 50240706 50244519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3429 11 837 Receptor kinase-like Gene Family AT3G46290 65.988 0.0 1078
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso11g3429 Malectin_like 7.4e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3429 - - gmx:100305416 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0375 15 3385050 3388633 Gso11g3429 11 50240706 50244519 GST
Gso11g3429 11 50240706 50244519 Gso12g0611 12 5661138 5665021 PCT
Gso11g3429 11 50240706 50244519 Gso11g1230 11 11182170 11185379 PCT
Gso12g0611 12 5661138 5665021 Gso11g3429 11 50240706 50244519 PCT
Gso11g1230 11 11182170 11185379 Gso11g3429 11 50240706 50244519 PCT