Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3426 ATGTATGCAAATTCCAGCACTGCATCACCTTCCTCATTCTTCCCCAAACTCACTGAACTCAACAATTCTGAGACCAATTACTATTATTACCACAACAATAACAATAACAATAACAATAGTAATTGTAGCAGTGGCTATAGCAGTTACGGTGGATCACCCTCACCCACACCTCCTTCTGTGCCCATTCCCAACTTGATGCAGAGGAGTGTTAGCTCCCATTCCTTCCACTGCAACAACAATGCCACCCATCATCCCTTTTCTGCTCTCTTTGCTCAGCTGCTCGACTCCGACGACTCTCCCGTCAGAAGAGTTTGCAGTACTGGTGATCTCCAGAGGATCAATGGAATGCAACATAATCATCACTCGGATAGTCCGTTATCAAGCGAAAGTAGTATGATCATAGAAGGAATGAGCAGAGCCTGTCGATATAGCCCGGAGGAGAAGAAGGTCAGAATTGAGAGATACAGAAGCAAGAGGAGCCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGCATTAGAGGACGGTTTGCGAGGAATGACGAAATTGACAAGAACACTACAATTCAATGGAGCCAAATTGGTGCTGGAGAGGATGAGGATGAAGAAGATGAGAATTGGATCACTATGTTAGATTCCATAGTTGCTGCAAATTTTGCTCAAGAGTCTCAAGGAAGTTCCTCCTTTGGTTTATTCTATTAG 732 0.4413 MYANSSTASPSSFFPKLTELNNSETNYYYYHNNNNNNNNSNCSSGYSSYGGSPSPTPPSVPIPNLMQRSVSSHSFHCNNNATHHPFSALFAQLLDSDDSPVRRVCSTGDLQRINGMQHNHHSDSPLSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRSQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNTTIQWSQIGAGEDEDEEDENWITMLDSIVAANFAQESQGSSSFGLFY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3426 243 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 243 IPR045281 GO:0009909
Gso11g3426 243 Pfam CCT motif 150 190 IPR010402 GO:0005515
Gso11g3426 243 PANTHER CCT MOTIF PROTEIN 3 243 - -
Gso11g3426 243 ProSiteProfiles CCT domain profile. 148 190 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3426 Gso-Chr11 50221357 50224032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3426 144 195 C2C2-CO-like Transcription Factor Family AT5G15850 48.077 4.45e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g3426 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3426 - - gmx:100820236 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3426 11 50221357 50224032 Gso12g0609 12 5634475 5637661 PCT
Gso11g3426 11 50221357 50224032 Gso11g1232 11 11193856 11196975 PCT
Gso12g0609 12 5634475 5637661 Gso11g3426 11 50221357 50224032 PCT
Gso11g1232 11 11193856 11196975 Gso11g3426 11 50221357 50224032 PCT