Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3422 ATGGAGCAGTCAGAAAAATCGCTCACGAAAATATCACCACTAAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAAACACTTCAGCTTTAGCTTCAACTTCAACCAACGCCCGCGTGCGTTCACAGCCTCTTTGGAAATCGTGGACGGAGTCGGAAGAACCGCGCAATGAAATCGCTGCCACGTCGTGGATGGCCATCAATCCGGCGGCCGGAGAAAGCGGCGAGGCGGCGCAGAGGGCGGCGGAGTGGGGGTTGGTGCTCCGGACCGACACCGAGACCGGCAAGCCGCAGGGGGTGGCGGTGAGGAACTCCGGCGGCGAGGAACCTAACGCCGCGAAACTCGCCGCCGCTGCTTCGTCATCCAGGAAGAACTCTCAGAACTCCGCCAGAACTTCCGGCGACTCTTCGGACGGCGGCGGCGGAGGCGGAGGGATTCCGAGAATTTCGGAGGATGTGATGGGAGCTTTGTCGGCTTTTCAACAGACTTTCGTGGTTTCGGATGCTACCAAAGCCGATTACCCGATCCTGTATGCGAGTGCTGGGTTCTTTAAAATGACGGGTTATACGTCCAAGGAAGTTATTGGGAGAAATTGTCGTTTTTTACAGGGTGCGGACACGGATCCCGAAGACGTGGCAAAGATAAGGGAAGCATTGCAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTTCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGTCCAAGGAGAAGACGCTACGTCCAAATGGATTGCCCGAATCCTTGATTCGATATGATGCACGGCAGAAAGAGAAGGCTACAAGTTCAGTAACTGAGTTGCTGCAGGCCATGAAGCGCCCCCGAGCATTAAGTGAATCCGCAAGCCGTCCCTCCATCAGAAAATCAGGATCTAGATCTTCAGACGAAGAAAAATTAGAACAAGAACAAGAAGATGACAAAGAGAAAGCACAAAAAACATTAAGAAGAATATCTGAGAGTGGAGCTTCATTTGGACGCAAGTCCGAAGGATCAGGAAATAGAATTTCAATGGAAAGAATCAGTGAACTGCCCGAAAATAAACACAGAAACTCTCAACGACGTTCTTTCATGGGGTTCAGGAGGAAAAGTCAGTCCAATGATGAAAGCATGGATAGTGAAGTCATTGAGGACGAGAGCTCTGAGAGTGAGGATGATGAGAGGCCTAATAGTTTTGAATTAGATGACAAAGAAAAGCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTCGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAACAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTAATCAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAATTGGTAAAACAAACTGCAGAAAATGTCGATGAGGCAGTGAGAGATCTTCCGGATGCTAATAAGAAACCAGATGATTTATGGACAAATCATTCAAAAACAGTTCACCCGAAACCTCATAGGAAGGATGACCCTGCATGGAAAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACAGATAGGCTTAAAGCATTTCAGGCCAATTAAACCATTGGGGTCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACTGGTCAATATTTTGCGATGAAAGCTATGGATAAGGGTGTTATGCTCAATCGTAATAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATTCTTGACAAGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTCCAGACCAAAACACACGTTTGTTTGATTACTGATTATTGTCCTGGGGGAGAACTATTCCTGCTTCTTGATCGGCAGCCAACTAAGGTTCTCAAGGAAGATGCCGTGAGATTTTATGCAGCAGAGGTAGTGATCGCATTGGAGTACCTTCATTGCCAAGGAATAATATATCGAGATTTGAAGCCAGAAAATGTGTTACTCCAGAGCAATGGGCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACATCTAGCAAGCCACAGCTTATAATTCCAGCTACCAATTCAAAGAAGAAGAAAAAGAAGAAACAGAAAAGTCAAGAGGTTCCAATGTTTATGGCAGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATTGCTCCGGAAATTATAACTGGTTCAGGTCACACAAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATATGAAATGCTTTATGGGTATACGCCATTCCGGGGGAAAACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCTAAAGACAGATTGGGTTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTACCGGAAACTGAAGAAGAAAAAGAAGCCAAAGATATACATCCTGGGCTAGAGGATCTGCAGACAAATATTTTCTAA 2949 0.4527 MEQSEKSLTKISPLRSSFPRDPRGSLEVFNPNTSALASTSTNARVRSQPLWKSWTESEEPRNEIAATSWMAINPAAGESGEAAQRAAEWGLVLRTDTETGKPQGVAVRNSGGEEPNAAKLAAAASSSRKNSQNSARTSGDSSDGGGGGGGIPRISEDVMGALSAFQQTFVVSDATKADYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKTLRPNGLPESLIRYDARQKEKATSSVTELLQAMKRPRALSESASRPSIRKSGSRSSDEEKLEQEQEDDKEKAQKTLRRISESGASFGRKSEGSGNRISMERISELPENKHRNSQRRSFMGFRRKSQSNDESMDSEVIEDESSESEDDERPNSFELDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVNKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLVKQTAENVDEAVRDLPDANKKPDDLWTNHSKTVHPKPHRKDDPAWKAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSSKPQLIIPATNSKKKKKKKQKSQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPLLPETEEEKEAKDIHPGLEDLQTNIF* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3422 982 MobiDBLite consensus disorder prediction 123 141 - -
Gso11g3422 982 ProSiteProfiles PAC domain profile. 228 282 IPR000700 -
Gso11g3422 982 ProSiteProfiles Protein kinase domain profile. 647 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3422 982 ProSiteProfiles PAC domain profile. 520 574 IPR000700 -
Gso11g3422 982 SMART pac_2 231 273 IPR001610 -
Gso11g3422 982 SMART pac_2 523 565 IPR001610 -
Gso11g3422 982 MobiDBLite consensus disorder prediction 431 446 - -
Gso11g3422 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Gso11g3422 982 CDD PAS 461 561 IPR000014 -
Gso11g3422 982 PANTHER FLIPPASE KINASE 1-RELATED 104 982 - -
Gso11g3422 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 462 561 IPR035965 -
Gso11g3422 982 MobiDBLite consensus disorder prediction 412 430 - -
Gso11g3422 982 MobiDBLite consensus disorder prediction 311 446 - -
Gso11g3422 982 MobiDBLite consensus disorder prediction 95 153 - -
Gso11g3422 982 ProSiteProfiles PAS repeat profile. 446 519 IPR000014 -
Gso11g3422 982 MobiDBLite consensus disorder prediction 331 357 - -
Gso11g3422 982 CDD STKc_phototropin_like 645 960 - -
Gso11g3422 982 PANTHER PHOTOTROPIN-1 104 982 - -
Gso11g3422 982 SMART pas_2 156 225 IPR000014 -
Gso11g3422 982 SMART pas_2 448 517 IPR000014 -
Gso11g3422 982 SMART serkin_6 647 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3422 982 MobiDBLite consensus disorder prediction 601 625 - -
Gso11g3422 982 Pfam PAS domain 177 271 IPR000014 -
Gso11g3422 982 Pfam PAS domain 469 561 IPR000014 -
Gso11g3422 982 ProSitePatterns Protein kinases ATP-binding region signature. 653 676 IPR017441 GO:0005524
Gso11g3422 982 SUPERFAMILY Protein kinase-like (PK-like) 630 957 IPR011009 -
Gso11g3422 982 Gene3D Transferase(Phosphotransferase) domain 1 731 960 - -
Gso11g3422 982 Gene3D PAS domain 168 330 - -
Gso11g3422 982 MobiDBLite consensus disorder prediction 1 26 - -
Gso11g3422 982 Pfam Protein kinase domain 649 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3422 982 Coils Coil 338 362 - -
Gso11g3422 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 175 267 IPR035965 -
Gso11g3422 982 Gene3D PAS domain 435 599 - -
Gso11g3422 982 Gene3D Phosphorylase Kinase; domain 1 646 967 - -
Gso11g3422 982 CDD PAS 181 270 IPR000014 -
Gso11g3422 982 TIGRFAM sensory_box: PAS domain S-box protein 471 561 IPR000014 -
Gso11g3422 982 TIGRFAM sensory_box: PAS domain S-box protein 181 274 IPR000014 -
Gso11g3422 982 ProSiteProfiles PAS repeat profile. 154 225 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3422 Gso-Chr11 50156780 50171722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3422 1 982 AGC Kinase Gene Family AT3G45780 69.659 0.0 1361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso11g3422 Pkinase 4.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3422 K20715 - gmx:100817565 1873.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0380 15 3426012 3441150 Gso11g3422 11 50156780 50171722 GST
Gso11g3422 11 50156780 50171722 Gso12g0606 12 5577873 5598319 PCT
Gso11g3422 11 50156780 50171722 Gso11g1539 11 17916650 17920332 PCT
Gso12g0606 12 5577873 5598319 Gso11g3422 11 50156780 50171722 PCT
Gso11g1539 11 17916650 17920332 Gso11g3422 11 50156780 50171722 PCT