Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3420 ATGGGTTGCTTTCGTTGCACCGGCAAATCAAGCAAAAAAACCAACAACATTAATCACGCCGAGAAGCACACTCCTGCTGATAAGGTCAAAGTTAATTCGAATTTGAATGGTAAAAAAGAAGATAATAATCCTAAGCCTGATCAGCTATCTCTGGACGTGAAGTATTTGAATTTAAAAGAGGTTTCCAATGAAGGAAAAGTTAATGGTTACCGGGCACAGACATTTACTTTTGCTGAGCTTGCAGCTGCAACAGGGAATTTCAGGTTAGATTGCTTTCTGGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGGCGCATAGACAAAATAAATCAGGTTGTAGCAATAAAGCAACTAGACCCTCATGGGCTTCAAGGAATTAGAGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATTTGGTCAAGTTAATTGGTTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGTCATTGGGATCTTTGGAGAATCGTTTGCACGATCTTCCGCGTGGTAGAAAACCGATTGATTGGAATTCAAGAATGAAAATAGCAGCTGGTGCAGCTAGAGGTTTAGAGTATTTGCATAATAAAATGAAACCTCCTGTCATATACCGGGATCTGAAATGCTCCAATATTCTGTTAGGCGAAGGATATCATTCGAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGACCAAGTGGTGATAAAACCCATGTTTCAACAAGAGTTATGGGAACATATGGATATTGTGCCCCAGACTATGCAATGACGGGTCAATTGACGTTCAAGTCTGATATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATCACAGGCAGGAAGGCGATCGACAATACAAAGCCTGCTAAAGAACAAAATCTAGTTTCATGGGCAAAGTCTTTATTCAAAAACCGTAAAAGATTCTGTGAGATGGTTGACCCATTGCTTGAAGGTCAGTATCCAATGAGAGGTTTGTACCAAGCTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAGCCTAATATGCGGCCTGAAACAACCGATGTGGTTACAGCTCTAGATTACCTTGCATCCCAGAAATACGATCCCCAAATTCATCCAGTACAAAGCTGTAGAAAAGGTTTATCTTCTCCAAGAGAAAGAAGCAGTGGCCATAGACGTACTGTTAGTAATGATTCTGATCCAAGAGCAAGAAGCGATGGTCATAGACGAACTGTTTGTAATGGTTCTGAGACAAGAGCAAGAAGCAATTGTCATAAACGAACTGTTAGTATTAGTAATGGTCATAGTAGTAGTTCTGAGACAGAAAGCTCTAGAAAAGGTCTATCTTCTCCAAGGGTGAGAAGTGATGGTCACAGACATTTTGTTAGCAATGGTTCTGAGACAGACAGTTCTGGAGATTAG 1428 0.4069 MGCFRCTGKSSKKTNNINHAEKHTPADKVKVNSNLNGKKEDNNPKPDQLSLDVKYLNLKEVSNEGKVNGYRAQTFTFAELAAATGNFRLDCFLGEGGFGKVYKGRIDKINQVVAIKQLDPHGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMSLGSLENRLHDLPRGRKPIDWNSRMKIAAGAARGLEYLHNKMKPPVIYRDLKCSNILLGEGYHSKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDNTKPAKEQNLVSWAKSLFKNRKRFCEMVDPLLEGQYPMRGLYQALAIAAMCVQEQPNMRPETTDVVTALDYLASQKYDPQIHPVQSCRKGLSSPRERSSGHRRTVSNDSDPRARSDGHRRTVCNGSETRARSNCHKRTVSISNGHSSSSETESSRKGLSSPRVRSDGHRHFVSNGSETDSSGD* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3420 475 MobiDBLite consensus disorder prediction 449 465 - -
Gso11g3420 475 Gene3D Phosphorylase Kinase; domain 1 57 163 - -
Gso11g3420 475 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gso11g3420 475 Pfam Protein tyrosine and serine/threonine kinase 90 360 IPR001245 GO:0004672|GO:0006468
Gso11g3420 475 MobiDBLite consensus disorder prediction 386 426 - -
Gso11g3420 475 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3420 475 CDD STKc_IRAK 93 362 - -
Gso11g3420 475 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 396 - -
Gso11g3420 475 MobiDBLite consensus disorder prediction 6 26 - -
Gso11g3420 475 MobiDBLite consensus disorder prediction 427 448 - -
Gso11g3420 475 Gene3D Transferase(Phosphotransferase) domain 1 164 379 - -
Gso11g3420 475 MobiDBLite consensus disorder prediction 374 475 - -
Gso11g3420 475 PANTHER OS07G0668900 PROTEIN 1 396 - -
Gso11g3420 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gso11g3420 475 SUPERFAMILY Protein kinase-like (PK-like) 73 366 IPR011009 -
Gso11g3420 475 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3420 Gso-Chr11 50145133 50148902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3420 1 366 Glycoside Hydrolase AT3G07070 55.827 8.23e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso11g3420 PK_Tyr_Ser-Thr 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3420 - - gmx:100810614 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0382 15 3449465 3453165 Gso11g3420 11 50145133 50148902 GST
Gso11g3420 11 50145133 50148902 Gso12g0605 12 5568127 5572595 PCT
Gso11g3420 11 50145133 50148902 Gso11g1238 11 11271725 11276405 PCT
Gso12g0605 12 5568127 5572595 Gso11g3420 11 50145133 50148902 PCT
Gso11g1238 11 11271725 11276405 Gso11g3420 11 50145133 50148902 PCT