Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3417 ATGTTGGATCTTAATCTGACTGCCGAGTCGACTCAGAACGACGAGTTGCTGGTGCTGTTGGACAAGTTTCCTGAAGCTTCGTCGGGAACTTCGAATTCCTCCATCGTGAATGCGGAGGGGTCGAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGACGTGTTCACCTTCAATTTCGGAATCCTTAAGGTGGAAGCCGCGAATGACGTCGTTGCCGCGGCGACGAAGGAGCTGTTTCCGGTGAGCTCGGAGAATTGGCAGGGGCAGAGTTCGACGTCGTTGATTCAGGCGAGGAAGAGTTTGATGGATCTCTCACTAGATCAACAAAACGGGGAGGTGAAGGTGGTACAGGTTCAGCCACAGCCTAAGGTGAAGAAGAGTAGGAGAGGTCCACGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACCGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATTAAATTCAGGGGACTTGATGCTGACATCAATTTTAATCTCGTTGATTATGAGGAGGATCTAAAACAGATGAAGAATCTTTCCAAGGAGGAGTTCGTGCACATACTCCGCCGCCACAGTTCCGGTTTCTCAAGGGGGAGTTCGAAATACCGGGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGGAAAAAGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCTGTGACTAACTTTGAGCCAAGTACATATGAGAGCGAGATGAAACCCGAAGCTATTAATGAAGGTGGCAGTCACGACCTTGACCTCAGTCTGGGCATAGCGACCCCAGGACATGGTCCCAAAGAAAACAGGGGGCATCTTCAGTTCCAGTCCATCCCTTACAACATGCATCCTGGAAGAAGTTCAATGATGGAGACTAATATTAATTCCGTTATTGGTGATCCTTCTTTGAAAAGACTGGTTGTAACTGAAGAGCGTCCTTCTGTGTGGAATGCCGCATATTCCACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATGGGCACAGATCCTTCAAAAGGAGTCCCAAACCCCAACTGGGCGTGGCAAACACATGGCCAGGTTACTGACACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCCACTTTTCCATCAACTGCCATCTTTCCAACAAAATCCATCAACTCAGTTCCCCATAGCCTCTGTTTCACTTCACCCAGCACACCAGGTAGCAACGCACCTCAATTCTATAACTATTACGAGGTGAAGTCCCCGCAGCCACCGTCCTAG 1386 0.4993 MLDLNLTAESTQNDELLVLLDKFPEASSGTSNSSIVNAEGSSNEDSCSTRAGDVFTFNFGILKVEAANDVVAAATKELFPVSSENWQGQSSTSLIQARKSLMDLSLDQQNGEVKVVQVQPQPKVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHDLDLSLGIATPGHGPKENRGHLQFQSIPYNMHPGRSSMMETNINSVIGDPSLKRLVVTEERPSVWNAAYSTFFPNLERAERMGTDPSKGVPNPNWAWQTHGQVTDTPVPPFSTAASSGFSISATFPSTAIFPTKSINSVPHSLCFTSPSTPGSNAPQFYNYYEVKSPQPPS* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3417 461 SMART rav1_2 229 277 IPR001471 GO:0003700|GO:0006355
Gso11g3417 461 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Gso11g3417 461 MobiDBLite consensus disorder prediction 26 47 - -
Gso11g3417 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 447 - -
Gso11g3417 461 CDD AP2 228 273 IPR001471 GO:0003700|GO:0006355
Gso11g3417 461 CDD AP2 137 192 IPR001471 GO:0003700|GO:0006355
Gso11g3417 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 447 - -
Gso11g3417 461 SUPERFAMILY DNA-binding domain 228 272 IPR016177 GO:0003677
Gso11g3417 461 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Gso11g3417 461 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Gso11g3417 461 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Gso11g3417 461 Gene3D AP2/ERF domain 228 272 IPR036955 GO:0003700|GO:0006355
Gso11g3417 461 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3417 Gso-Chr11 50087431 50091888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3417 1 420 AP2-EREBP Transcription Factor Family AT5G60120 48.060 6.77e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g3417 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3417 K09284 - gmx:100777102 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0384 15 3518645 3523350 Gso11g3417 11 50087431 50091888 GST
Gso11g3417 11 50087431 50091888 Gso12g0602 12 5461644 5466026 PCT
Gso11g3417 11 50087431 50091888 Gso11g1241 11 11378917 11383276 PCT
Gso12g0602 12 5461644 5466026 Gso11g3417 11 50087431 50091888 PCT
Gso11g1241 11 11378917 11383276 Gso11g3417 11 50087431 50091888 PCT