Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3401 ATGGAGAGTGACACAAACACCACATTTTCTCACTCCTCAAATACTACCCCTTCTTCCCCTCCCCAACAAGTTCAAGTTGTCATGATCCCTTGTGCTGCTTGCAAGATTCTGAGGCGAAGATGTGCTGAGAAATGTGTCTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCACTGCACACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGGCCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCAGTGTACGGATGTGCAGGTGCAATTTGCCACCTCCAAAAGCAAGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCGAATCTCGTGGCTCTAATTTGCATGGAAATGGCACAAACACAAACTCCACAGGAATCACCACAACAATCTGTGGACAACTTCATTTCAAGCCCTTCACACAGCAGCGGCTATCAAAACAATCTCAATTTCTTTGAGGAGAACACCAATAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 597 0.4623 MESDTNTTFSHSSNTTPSSPPQQVQVVMIPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICHLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMAQTQTPQESPQQSVDNFISSPSHSSGYQNNLNFFEENTNNLNSLWEPLWT* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3401 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 195 - -
Gso11g3401 198 MobiDBLite consensus disorder prediction 1 22 - -
Gso11g3401 198 Coils Coil 109 136 - -
Gso11g3401 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 195 - -
Gso11g3401 198 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Gso11g3401 198 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3401 Gso-Chr11 49915655 49917860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3401 26 198 AS2 family AT2G28500 67.027 1.09e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso11g3401 LOB 3.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3401 - - gmx:100819336 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0391 15 3611803 3613851 Gso11g3401 11 49915655 49917860 GST
Gso11g3401 11 49915655 49917860 Gso12g0590 12 5329296 5331423 PCT
Gso11g3401 11 49915655 49917860 Gso11g1251 11 11546450 11548954 PCT
Gso12g0590 12 5329296 5331423 Gso11g3401 11 49915655 49917860 PCT
Gso11g1251 11 11546450 11548954 Gso11g3401 11 49915655 49917860 PCT