Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3397 ATGGAAATTGATCTGAATGATGATGCAGTGACGAGTGAGGCTGAAAAGAGTGCGTCTTGCAATGAGGAGTGTGAGAAAGGTGCTGCTTTTGCGTTGTCCTCTTCAACATGTTCATCCTCTGGCTCCTCCTCCGCACGTGTGTCTTCTTCTTATCTTGAGCTTTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCGAAGAAAGGGAATGTGGTGGTCTATTTCCCACAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCCCTTTTCACCAATGGAGATGCCAACCTATGATCTTCAGCCACAGATCTTTTCTAGAGTTGTCAATATTCAGCTACTCGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCGGGCTGAGTATTTAGAGGGAAAAGAGCTTGAGGAATTGGGAACAGATGAAGAGGGAAATGAAGCAACACCTACAAAGTCAACCCCTCACATGTTTTGCAAAACTCTTACAGCCTCAGATACCAGCACTCATGGGGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCGTTTGGATTATAAGCAGCAAAGACCTTCTCAAGAGCTTGTTGCCAAAGATTTGCATGGTGTGGAGTGGAAATTTCGACATATTTACAGAGGTCAACCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTTAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAGTTATTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCCGCGAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAATATATCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCGGAAAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAGTCATCAAGATAGAGTATCTCCATGGGAGATTGATCCTTCTTCGTCTCTTCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGCTGCCACACCCAGTCACCTCACCACTGCAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCAGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACGGGTTTTATGTCACTATATTATGGATGTGACAAAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCTAATCTTGCATCAACTGGAGTGAGAAAGATTTCTGCTGCTGAGTTTATGAGGGTTCACCCTTCTAGTTTTGCAGGCTTTTCGGAAACTAACATGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTTAGATCCCTAACAGGAAAGGCTGATTTGAACTTTGGTTCTTGGGGCAAACCCAATGTCAGTTACTCAAATAACAACCTGCATCAGGCAACCAAACCTAGCTTTCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTCCCTTATGGTGATATTCACAATGCTGGTCAAGGTAGCAGCATCTTGTGCTCCAAACCGACCAATTTCCAACGAGAGAATATCCCATTTAACACTCCTTCTACTCAGTCAGGGATCATGAGAAATGAAGTTGGACGGTCAGACATCACAATTCCAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTACTGCTTCTTTAGGGGCAAACATGAGGATTCCAAAGGATGACAATTTCAAGGGGCAGGTAAAAGCTTGTAAACTATTTGGAATTTCCTTGTCCGGGGAAACTACCGCCCAAAATTTACAGAACTCTGCTAAAAGAAGCTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAATAGATCCTAATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAACGACATTATGGTTGTGGGAGACGATCCGTGGCATGAGTTCTGCGATGTGGTATCCAAGATTCATATACATACACAAGATGAGGTGGAAAAGATGACAATTGGGATGATGATCAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGACGATGGAGGCTTCAAAGTCTTCCTCTGTGGGTCAGCCAGATTCTTCTCCAACAGTGGTTAGAATGTAG 2409 0.4392 MEIDLNDDAVTSEAEKSASCNEECEKGAAFALSSSTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSPFSPMEMPTYDLQPQIFSRVVNIQLLANKENDEVYTQVTLLPRAEYLEGKELEELGTDEEGNEATPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPRLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQSYYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEISHQDRVSPWEIDPSSSLPPLSIQSSRRLKKLRPGLQAATPSHLTTAGGSGFMDSEESVRSSKVLQGQENTGFMSLYYGCDKVTKQPEFEIRSPSHPNLASTGVRKISAAEFMRVHPSSFAGFSETNMFPRVLQGQEICPFRSLTGKADLNFGSWGKPNVSYSNNNLHQATKPSFHSLGPEVIQTAYFPYGDIHNAGQGSSILCSKPTNFQRENIPFNTPSTQSGIMRNEVGRSDITIPNEQKLQDNISGTASLGANMRIPKDDNFKGQVKACKLFGISLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFSMEGLLIDPNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIHTQDEVEKMTIGMMINDDTQSCLEQAPVTMEASKSSSVGQPDSSPTVVRM* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3397 802 PANTHER AUXIN RESPONSE FACTOR 10 790 - -
Gso11g3397 802 MobiDBLite consensus disorder prediction 417 437 - -
Gso11g3397 802 CDD B3_DNA 159 261 IPR003340 GO:0003677
Gso11g3397 802 SUPERFAMILY CAD & PB1 domains 676 752 - -
Gso11g3397 802 Pfam AUX/IAA family 664 756 IPR033389 -
Gso11g3397 802 SUPERFAMILY DNA-binding pseudobarrel domain 153 273 IPR015300 -
Gso11g3397 802 SMART B3_2 161 263 IPR003340 GO:0003677
Gso11g3397 802 Gene3D - 159 263 IPR015300 -
Gso11g3397 802 MobiDBLite consensus disorder prediction 407 437 - -
Gso11g3397 802 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 790 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso11g3397 802 Pfam Auxin response factor 287 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g3397 802 MobiDBLite consensus disorder prediction 781 802 - -
Gso11g3397 802 Pfam B3 DNA binding domain 161 262 IPR003340 GO:0003677
Gso11g3397 802 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677
Gso11g3397 802 ProSiteProfiles PB1 domain profile. 673 755 IPR000270 GO:0005515
Gso11g3397 802 Gene3D - 669 762 - -
Gso11g3397 802 Gene3D - 325 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3397 Gso-Chr11 49862813 49868916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3397 47 802 B3 DNA Binding Superfamily AT5G60450 61.017 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g3397 AUX_IAA 6.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3397 - - gmx:100812909 1446.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1435 12 37048489 37055027 Gso11g3397 11 49862813 49868916 GST
Gso11g3397 11 49862813 49868916 Gso12g0582 12 5233376 5241167 PCT
Gso11g3397 11 49862813 49868916 Gso11g1262 11 11650837 11657680 PCT
Gso12g0582 12 5233376 5241167 Gso11g3397 11 49862813 49868916 PCT
Gso11g1262 11 11650837 11657680 Gso11g3397 11 49862813 49868916 PCT