Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3393 ATGGAGGGAGATCAACAGGGTTCTAATTACTCTTTTCCACCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAGATCAGTTCACGTCCACTTCCAGCTTCCATTATAGCTGAAATTAATCTCTATAAGTATAACCCGTGGGAGCTACCGAATAAGTCCTTGTTTGGAGAGGAAGAGTGGTATTTCTTTAGCCCGAGAGACAGGAAGTATCCAAATGGATTGAGGCCAAACAGGGCTGCAGCCTCAGGATACTGGAAGGCAACTGGAACTGACAAGCCAATTCTTTCTTCTTGCGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGGCCTCCAAAGGGAGCTAAGACGGATTGGATCATGAATGAGTATAGATTGGTTGACACAATCACCACATCCTCCAGGCTAAAAGGCTCCATGAGGTTGGATGACTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCTCCGAAGAATTCATGTGAAAATCAAGAGAGTCCTAATGAACTAAACTTGTCTGCAAAACTACCAAGGAGTGAAGAATACCCAACAAACATGAACTGTCGGGCTGACATGATCCCTGATTATCAATACAAAGACTATCAAATCATAGCCTCTATTCTTGTTGGTGGACCTATTCCTCCCACTGAAAGCATGCCAAACCTTAGCTTTAAGGGCTGCAAAGGCAACAATGTAGTTTCAGTTTATGAAGATGATTTCACTAAAGTGAATTCTCAAGCGACAATTCCTTCTTTGGAAAGTTATTTCAACCCACTGACAAGAAAATCCAGTGAAGATGAACAGTATGGAAATCTCATTTCTTTTAACAGGAAGTTCAACACTGAGAACAGAATGGATGGATCCACTAGCAAAGTGTTGACCAGTAGAGAATTGAATTGCTATAACCAAAACCAGTCTCAAGATGACATTTTCAATGTGAACCCACCAGATCCTAGCATCAATTTTCAAGAGCTAAACGAATTAGACTTTTCGGGAAGGTACCATCAGTGA 1050 0.419 MEGDQQGSNYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEINLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSCGSKRIGVKKALVFYSGRPPKGAKTDWIMNEYRLVDTITTSSRLKGSMRLDDWVLCRVRHKGYSPKNSCENQESPNELNLSAKLPRSEEYPTNMNCRADMIPDYQYKDYQIIASILVGGPIPPTESMPNLSFKGCKGNNVVSVYEDDFTKVNSQATIPSLESYFNPLTRKSSEDEQYGNLISFNRKFNTENRMDGSTSKVLTSRELNCYNQNQSQDDIFNVNPPDPSINFQELNELDFSGRYHQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3393 349 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Gso11g3393 349 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Gso11g3393 349 PANTHER NAC TRANSCRIPTION FACTOR 56 1 319 - -
Gso11g3393 349 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Gso11g3393 349 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Gso11g3393 349 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3393 Gso-Chr11 49814890 49817111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3393 12 175 NAC Transcription Factor Family AT1G61110 66.860 7.58e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g3393 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3393 - - gmx:100817193 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1441 12 37149717 37152129 Gso11g3393 11 49814890 49817111 GST