Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3392 ATGATGTCTCAAGAAGCAATATCTGTTCCTTCCAACAACCTCAGAGACCCCTCGGTTCAACTTCATGAACCAAACTCAAACTCAAATTCAAACCCTAATAATCCTAACCCTAATTCACTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCGACCAACCGATTCATCTGCGAAGTGTGCAACAAGGGTTTCCAGAGGGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACTTACCGTGGAAGCTGCGGCAGAGAAACAAGGAAGAGGTGGTGAAGAAGAAGGTGTACGTTTGTCCAGAGAAGAGTTGTGTGCACCACGACCCTTGCAGAGCCCTGGGAGACCTCACCGGAATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATGGAGCCTTTTGTGACGCCATGGCGGAACAAAATGCGAGGCTTCCGGCGGTTTTATCAAACCTTGGAAGCGAGATTTTGATGAATGCTGCTCAAGGTCCAAGAGTAATGCCACAGGCTTTACAATTACATGGGTTTCATAATTCAGAGTTTGGTGGGCCAGGCTCAGAACCATACATGGGGAATTTTGCGGATGTGAACCATGTCGAGCATAATAAGCTAAGGATGCCACTATGGCTAGACCAGACCAATAATATTCCTCTTCAGCTTAATCATCATCATCATCATCATCCTCTAAGCGTCTCAAGCAACAACTCTTCAAGTTTGTTCTCACCAGGAACAACCTTGGCTGAGGCAAACAACATGTTTGGGACATCATCGTCGTCACAGGGACAGTGGCTGAATTACCGATACCACCCAGAAGCATCATTTACACATGCCAACGTTTCTATTCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGACTTGTCGCATAGTGTGAGCTCTTTGTACCAAAGTCACATGGAACCTACAAGGATGAGTGGTGGTAATAATAATTTGGCCTTCGACAACTCCAACTTTGGCCTGTTGGACCCGAACATGTCAAGCACGTCCAGCAACAACAACAACCGCTACAACAATAACGTGGTTGAAATTCAGAAATTGTTCAAGCAAGGAAACCAGGCTGTTGAGAACTTCAACCACATGGTGAATTCCCAGGCAAGCACCAACAATATTATTGGAGGTGGGTTTTCATTGAGTAGCACCAAGGGTTTGGAGCACATGGTGATGCCGCGGATTGAAGAGTGGGAGAGTGGAGAACCAGAAATAATGCAGAAGCAACAACTACGTTCAAGTACTTCAAACGCTACTGAAGAGCACTTAACCAAAGATTTCATGGGTATTGGACCAGTGATCAACCTGCAAAGCCAGTTCCGTGGACATTACTGA 1530 0.4634 MMSQEAISVPSNNLRDPSVQLHEPNSNSNSNPNNPNPNSLKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRNKEEVVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHGAFCDAMAEQNARLPAVLSNLGSEILMNAAQGPRVMPQALQLHGFHNSEFGGPGSEPYMGNFADVNHVEHNKLRMPLWLDQTNNIPLQLNHHHHHHPLSVSSNNSSSLFSPGTTLAEANNMFGTSSSSQGQWLNYRYHPEASFTHANVSIPHGLKLEQEENKGDLSHSVSSLYQSHMEPTRMSGGNNNLAFDNSNFGLLDPNMSSTSSNNNNRYNNNVVEIQKLFKQGNQAVENFNHMVNSQASTNNIIGGGFSLSSTKGLEHMVMPRIEEWESGEPEIMQKQQLRSSTSNATEEHLTKDFMGIGPVINLQSQFRGHY* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3392 509 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Gso11g3392 509 ProSiteProfiles IQ motif profile. 498 509 IPR000048 GO:0005515
Gso11g3392 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 498 - -
Gso11g3392 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Gso11g3392 509 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 8 498 - -
Gso11g3392 509 Gene3D Classic Zinc Finger 49 122 - -
Gso11g3392 509 MobiDBLite consensus disorder prediction 1 43 - -
Gso11g3392 509 Gene3D Classic Zinc Finger 125 204 - -
Gso11g3392 509 MobiDBLite consensus disorder prediction 1 55 - -
Gso11g3392 509 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Gso11g3392 509 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Gso11g3392 509 SMART c2h2final6 112 142 IPR013087 -
Gso11g3392 509 SMART c2h2final6 147 167 IPR013087 -
Gso11g3392 509 SMART c2h2final6 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3392 Gso-Chr11 49801940 49804896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3392 26 204 IDZ Gene Family AT3G50700 80.556 9.58e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3392 zf-C2H2_jaz 8.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3392 K25870 - gmx:100811687 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1442 12 37183827 37187343 Gso11g3392 11 49801940 49804896 GST
Gso11g3392 11 49801940 49804896 Gso12g0578 12 5175391 5178205 PCT
Gso11g3392 11 49801940 49804896 Gso11g1266 11 11725913 11728938 PCT
Gso12g0578 12 5175391 5178205 Gso11g3392 11 49801940 49804896 PCT
Gso11g1266 11 11725913 11728938 Gso11g3392 11 49801940 49804896 PCT