Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3388 ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTTGTCCAAAAACCAAGACGACGGCGTCGGGATAAACGTGGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGCGATGAGACATATAGTGGTGACGTTACTAGTAACTGCACCAGTGTAGATGACAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTAAACTTTAGAGCTAAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGGATATGTTCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTACGCAATTAAGTCCTTTCACAAGTCTCAATTACAAAAGCTTCGAGTTGCACCGTCTGAGACTGCTATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCATGGCACTGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGATGAACTCCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAACCCCCAGTTGAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTGAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGAAGATGGGCCTATTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCATGGTGACTGAAGACTCTGATGGGAGCGATATACTTGCTTGA 1233 0.4225 MGDYKSFSFSKMMGCCGCFGFVQKPRRRRRDKRGISNLLSQGLLLDGETEGDETYSGDVTSNCTSVDDNEVQAVRNRSEDILNFRAKNGMVCRPFPVKETCKLDRSEDENGNKMINGYVREYKIGSGSYGKVALYRSSVDGKHYAIKSFHKSQLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITHHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGEDGPIPGYLCWCKRKSMVTEDSDGSDILA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3388 410 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Gso11g3388 410 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 6 407 - -
Gso11g3388 410 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 6 407 - -
Gso11g3388 410 Gene3D Phosphorylase Kinase; domain 1 112 215 - -
Gso11g3388 410 ProSiteProfiles Protein kinase domain profile. 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3388 410 CDD STKc_LKB1_CaMKK 124 379 - -
Gso11g3388 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Gso11g3388 410 Gene3D Transferase(Phosphotransferase) domain 1 217 385 - -
Gso11g3388 410 Pfam Protein kinase domain 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3388 410 SMART serkin_6 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3388 410 SUPERFAMILY Protein kinase-like (PK-like) 114 387 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3388 Gso-Chr11 49767042 49773129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3388 124 378 CBL-interacting serine-threonine protein kinases AT5G35410 33.725 2.04e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Gso11g3388 Pkinase 4.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3388 K00908 - gmx:100807940 835.484