Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3386 ATGGGGAATATCGAAAGCCGGAGAAGGAGGCGGCGCCACCCCACTCCACCACCACCACAACAAGAGGCAAACACAAACTACTACTTTGCACCTCGTCTTCCTTACTACCCCAACACCCTTCTTCCTCCTTATCACTACTACCCTCAACAACCACCTTCCCTTCACCACGAGAAAGCTGTCACCATCAGGAATGATGTCAATATCAAGAAGGACACTCTTCGAATGGAGCCTGATCAACACAACCCTCACCATTTTCTTGTCACTTTCACCTTTGATTCCATTGCTCCTGGATGCATTACAGTAATGTTTTTTGCCAAGGAAACTTTAGATGGTAAGCTGATAGCTGTAAAGAAAAGCTTGCTCAAACAAATCTCAATGCCTTTTCAGCAAGGTCTTTGTCAGAAATTCAGACAACCTTCTGGAACTGGCATTGAAATCTCAATGTTAGAGGAGACAGGACTGACCAAAGTAGGTGACACAGAAGTTTATCCTCTTGTGCTGAAGGCTGAGGTTCGACCATTAAACCATTATGAAAATGAGGGAAACCCATCTTCTCAAATTACTTTGGCTAGTTTTGGAAAAAGGGAGAGGGGTGAGTACAAGGTCCAAGTAATGAAACAGGTTCTCTGGGTCAATGGGAAGAGGTATGAACTGCAGGAGATATACGGCATTGGGAATGTTAGTGATGGTGATAGCCATGAATCTGGTGGAGATTGTGTAATTTGTTTGTCAGAACCGCCAGACATAACTGTCCTACCTTGCCGACACATGTGCATGTGCAGTGGCTGTGCTAATCTTCTGAAAGTTCATACAGCCAACTGCCCCATCTGTCGGTATCCAGTTGAGAGGCTTTTGGAAATTAAAGTAAATAATGGATATGTTATGGACCAGAGAGGAAAAAAAAAACAGTGCATGAGTCTTGTTTGA 927 0.4391 MGNIESRRRRRRHPTPPPPQQEANTNYYFAPRLPYYPNTLLPPYHYYPQQPPSLHHEKAVTIRNDVNIKKDTLRMEPDQHNPHHFLVTFTFDSIAPGCITVMFFAKETLDGKLIAVKKSLLKQISMPFQQGLCQKFRQPSGTGIEISMLEETGLTKVGDTEVYPLVLKAEVRPLNHYENEGNPSSQITLASFGKRERGEYKVQVMKQVLWVNGKRYELQEIYGIGNVSDGDSHESGGDCVICLSEPPDITVLPCRHMCMCSGCANLLKVHTANCPICRYPVERLLEIKVNNGYVMDQRGKKKQCMSLV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3386 308 ProSiteProfiles Zinc finger RING-type profile. 239 278 IPR001841 -
Gso11g3386 308 MobiDBLite consensus disorder prediction 1 25 - -
Gso11g3386 308 Pfam Zinc finger, C3HC4 type (RING finger) 238 283 - -
Gso11g3386 308 PANTHER MAHOGUNIN 1 293 IPR045194 GO:0061630
Gso11g3386 308 SUPERFAMILY RING/U-box 238 284 - -
Gso11g3386 308 PANTHER - 1 293 - -
Gso11g3386 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 288 IPR013083 -
Gso11g3386 308 SMART ring_2 239 277 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3386 Gso-Chr11 49747020 49749873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3386 43 258 C3H Transcription Factor Family AT3G09770 52.838 9.60e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3386 - - gmx:100816136 580.482