Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3385 ATGAGTGCTCATCAAAAAGAAAAACATAACACACCTTCGTCCAAACCAACGGTTTCTCATCCACTTCACAAGGTGGATGATCCAATGGGGGTGACCGATGAAAACGAAACCTTGCGTGTTAGTAATCAATGGAAGCGACAGAATCTTCTTCAGCTGGAAATACCGGCCAGAACATCGGAAGAGTCTTCTTCTCAGGATTTTGTTGGAATAAGGATGCCATTGACGCCAAGTCCAACTCCAAGTCAGAAAAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAAAGCCTCCTTCTTCATCATCCAGAGCCAAATCATCCATGAGAAACATCTTACCAAAATTCGGCTTCAGGAACCGTGCACCATCGATATCGCTTGATGTTGAAAAGGGTGTTACTACTGCTGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGTCTTCAATCCCAAGATCAGTGTCTCTCACGAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCATTACCGGTTGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTGTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACTCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAACACCAAAGAAAAAGGCATAAGGAGGCTGGATTCGGTTTTCCGTATTATTCCTTCCACTCCTCGCGTAATTGAAGTGAATGAAACAAGAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCTGTGTGTAGAATTTGTTTGGTTGATCTATGTGAAGGAGGCGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACTTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTAAGGATCCGAAGTGTTCGAGCTCAGAATACTAGAGCAAGGTCCGAACAGGGAGATGACTTCAGGGCTTGGCAGGAACTTCCAGTGCTTGTCATTGTCAGCATGCTTGCATATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGTACTGGGTCTACTCTCCTCCGTAACATCATCGACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGGCAATCCTTCTTGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGTCTTCTAGATGGAGAAGAAGATGGCAGGCACAACAGCGTGGTTCTTCAGCGATGACACAAGAAGGACTATGA 1422 0.4466 MSAHQKEKHNTPSSKPTVSHPLHKVDDPMGVTDENETLRVSNQWKRQNLLQLEIPARTSEESSSQDFVGIRMPLTPSPTPSQKRVNFLVTSRSVDAPKPPSSSSRAKSSMRNILPKFGFRNRAPSISLDVEKGVTTAAQEGSFSGHQEKSSIPRSVSLTKMFTPKIKRTSSLPVEELGRANVESVLCGTLGASPCGRETQGMIARSRSVPVNTKEKGIRRLDSVFRIIPSTPRVIEVNETRKDTENGDDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVRAQNTRARSEQGDDFRAWQELPVLVIVSMLAYFCFLEQLLVGRMRTKAIFISLPFACVLGLLSSVTSSTMVKSRFIWIYASVQFVLVVIFAHIFYPLVGKHAVLAILLATFAGFGVVMSGSSILLESSRWRRRWQAQQRGSSAMTQEGL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3385 473 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Gso11g3385 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 315 IPR013083 -
Gso11g3385 473 CDD RING_CH-C4HC3_MARCH 260 308 - -
Gso11g3385 473 SMART ringv_2 259 308 IPR011016 GO:0008270
Gso11g3385 473 PANTHER OS02G0165000 PROTEIN 24 463 - -
Gso11g3385 473 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Gso11g3385 473 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 463 - -
Gso11g3385 473 MobiDBLite consensus disorder prediction 35 82 - -
Gso11g3385 473 SUPERFAMILY RING/U-box 256 311 - -
Gso11g3385 473 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3385 Gso-Chr11 49735068 49739692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3385 248 314 C3H Transcription Factor Family AT2G37950 45.588 6.83e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3385 - - gmx:100815599 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3385 11 49735068 49739692 Gso12g0560 12 5022514 5028573 PCT
Gso11g3385 11 49735068 49739692 Gso11g1517 11 17682022 17687676 PCT
Gso12g0560 12 5022514 5028573 Gso11g3385 11 49735068 49739692 PCT
Gso11g1517 11 17682022 17687676 Gso11g3385 11 49735068 49739692 PCT