Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3380 ATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA 864 0.5116 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3380 287 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 MobiDBLite consensus disorder prediction 1 25 - -
Gso11g3380 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Gso11g3380 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Gso11g3380 287 MobiDBLite consensus disorder prediction 1 17 - -
Gso11g3380 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Gso11g3380 287 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Gso11g3380 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3380 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3380 Gso-Chr11 49698522 49700184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3380 1 287 Major Intrinsic Protein MIP AT2G37170 78.397 4.24e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3380 K09872 - gmx:732581 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1449 12 37328181 37329837 Gso11g3380 11 49698522 49700184 GST
Gso11g3380 11 49698522 49700184 Gso12g0619 12 5782234 5784628 PCT
Gso11g3380 11 49698522 49700184 Gso11g1511 11 17647653 17649907 PCT
Gso12g0619 12 5782234 5784628 Gso11g3380 11 49698522 49700184 PCT
Gso11g1511 11 17647653 17649907 Gso11g3380 11 49698522 49700184 PCT