Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3375 ATGAAGGAAACAGACAAGAGTTTGGATCCGCAGCTGTGGCACGCGTGCGCCGGCGGTATGGTTCAGATGCCGCCGGTGAACTCCAAAGTGTTTTATTTCCCGCAGGGACACGCGGAACATGCGCAGTCCAACGTCGATTTCGGAGCGGCGAGGATTCCGATTCCGCCGCTCATTCTGTGCCGCGTGGCAGCCGTGAAATTCCTGGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGCTGCGGCTGGTTCCTCTCAGAAACTCGGAGCTCGACTACGAAGACAGCGACGCTAACGGCGAGGCGGAGGGTTCGGAGAAGCCGGCGTCGTTCGCGAAGACGTTAACCCAGTCAGACGCGAACAACGGCGGCGGATTCTCCGTTCCGCGATACTGCGCGGAGACGATATTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAGGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCACGTCGGCACTTGCTGACTACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCGGGGGATTCCATCGTGTTTCTGCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGGAGTTGGTGGGCCAGAGGGGCCGTGCGGGTGGAGCAGTTATGGTTCTGGAGGGCATGGGCTTGGGCCATACGGGGCCTTTTCGGGTTTTATGAGGGAGGAGAGTGGGAGGGCGAAGGTGAGTGGTGAATCAGTGAGAGAAGCAGTTACTTTGGCGGCTAGTAACCAAGCGTTTGAGGTGGTTTATTATCCTCGAGCGAATACTCCTGAGTTTTGTATTAGGACCTCGGCTGTGAGAGGGGCTATGAGGATTCAGTGGTGTTCCGGTATGAGGTTCAAGATGCCTTTTGAGACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACTATTGCTTCTGTTCAGGTTCTTGATCCTATTCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAATCATCCATCTGGCAGCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTCCCCCTTGACGTTCAGTTTCCGATACCATCGTTTTCAGGCAACCCCTTTGGGTCTTCTAGCTCTAGCAGCCCCTTTTGTTGTCTCTCTGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATTCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACAATAAGCTGCAGTTGGGGTTGCTTCCAACTAAAGTCCACCAGCTTAATTTGCACGCCGGGATTTCTAATGCTAAGAGTAAAGAAAGTCTATCATCCTTGCTCTCCATGGGAAATTCTAACATGACTTTGGAGAAATCTGATCATGTCAAGAGACACCATTTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATCTCTAGATCTTCTAGTGATGTCGCCACGGATGATGAGAATAAGGAAAAGAAGAAGAAGGGATTTCTTAGTGACTCCCAGTCTTCAGTTTCACCAGGAAATTTATCTTCTACTGCCGAGTTCTCTTGGCAACTCGGTTCTGATACCAGTCATTGCAAGGTTTTCATGGAGTCTGAAGATGTAGGACGGACACTTGACTTGTCCTGCCTTTCTTCTTATCAAGAGTTGTACATGAGACTCGCTAACATGTTTGGAATAGAGAGGTCTGATATGTTGAGTCATGTTCTCTACTGCGACTCATCCGGTGCTCTTAAGCAAATTGGAGAGGAACCCTTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACCATTCTGACGGATTCAAACAACAAAGATAGTAGAAGGGTTTGGATCACAGGAACTCGAAATGCTGAACATGGATTGGATGCTGCATCAAATAAGACAGGTCCTCTCAGTATATTTGCTTAA 2013 0.5107 MKETDKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNVDFGAARIPIPPLILCRVAAVKFLADPETDEVFARLRLVPLRNSELDYEDSDANGEAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIARDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEGPCGWSSYGSGGHGLGPYGAFSGFMREESGRAKVSGESVREAVTLAASNQAFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVSWDEPDLLHNVKRVSPWLVELVSNVPIIHLAAFSPPRKKLRFPLDVQFPIPSFSGNPFGSSSSSSPFCCLSDNAPAGIQGARHSQIGISLSDLHLNNKLQLGLLPTKVHQLNLHAGISNAKSKESLSSLLSMGNSNMTLEKSDHVKRHHFLLFGQPILTEQQISRSSSDVATDDENKEKKKKGFLSDSQSSVSPGNLSSTAEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLSSYQELYMRLANMFGIERSDMLSHVLYCDSSGALKQIGEEPFSEFMKTAKRLTILTDSNNKDSRRVWITGTRNAEHGLDAASNKTGPLSIFA* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3375 670 Gene3D - 554 641 - -
Gso11g3375 670 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Gso11g3375 670 ProSiteProfiles PB1 domain profile. 557 637 IPR000270 GO:0005515
Gso11g3375 670 CDD B3_DNA 109 210 IPR003340 GO:0003677
Gso11g3375 670 MobiDBLite consensus disorder prediction 516 531 - -
Gso11g3375 670 PANTHER AUXIN RESPONSE FACTOR 2 646 - -
Gso11g3375 670 SUPERFAMILY DNA-binding pseudobarrel domain 105 211 IPR015300 -
Gso11g3375 670 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Gso11g3375 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 646 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso11g3375 670 SMART B3_2 110 212 IPR003340 GO:0003677
Gso11g3375 670 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g3375 670 MobiDBLite consensus disorder prediction 510 542 - -
Gso11g3375 670 Gene3D - 300 372 - -
Gso11g3375 670 Gene3D - 108 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3375 Gso-Chr11 49624613 49627694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3375 4 635 B3 DNA Binding Superfamily AT4G30080 59.254 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g3375 B3 5.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3375 - - gmx:100808472 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1466 12 37573872 37577312 Gso11g3375 11 49624613 49627694 GST
Gso11g3375 11 49624613 49627694 Gso12g0626 12 5876871 5880646 PCT
Gso11g3375 11 49624613 49627694 Gso11g1503 11 17542309 17545746 PCT
Gso12g0626 12 5876871 5880646 Gso11g3375 11 49624613 49627694 PCT
Gso11g1503 11 17542309 17545746 Gso11g3375 11 49624613 49627694 PCT