Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3374 ATGTCTAAGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTTAATGGTCTCTCAGACGAGATTTTTGATGATGTCATTAACTTTTTTGATTTCCCGCTGGAAGACGTGGAAGCTAATGGCGTCGAAGAAGACTGGGATGCTCAATTAAAATGCCTTGAAGACCCGCGTGTTGATGTTTATACAGCATCATCAGCTGGGTTGTGTGCCAAAACTCAAAATGAAAAGCCCCAACTTGGAATGAAGTTCTCTGCTTCTGGAAATGGGATTTCCCCAATAAAACAGCTGGGAAAAGCTCCTGGACCAGTATATGGAAAGACCATTACTCACCAGAATGTCACTTCCAATGGAAAAGATTTGCATCAATTCCAAACCTACACCTACAGCCCAGTTTCGGTTTTTGAAAGCAGCAGTTCGTCCTCAGTTGAGAATTCCAACTTTGATCGACCTGTCATCCCAGTAAAGCGGGCTCGTAGTAAACGTCAGCGTCCTTCAAGCTTCAGTCCTCTATTTTCAATTCCTTTCATCCTTAATTCACCGGCTATGCAAAATCATCAACGGATAGCAGCTGCTGACTCAGATTTTGGAACAAATGTTGCTGGGAATCTATCAAACAAACTAAAAAAGCAGAAAAAAAAGGATTCGTCCCTGCTATCAGATGATGTTGAGATGATGAGATCCTCATCACCGGAGTCAGGTTCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAAACCCCACAATGGAGAGAGGGACCTGTGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACCGGTCTGGCCGCCTCTTTCCTGAATACCGACCGGCAGCTAGCCCGACTTTTGTAGCATCACTGCACTCAAACTGTCACAAGAAGGTTGTGGAGATGAGAAGCAGAGCCATCCAGGAGCCTGTTAGGGGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATGCTGTAGGATAA 984 0.4441 MSKDIANMKDSWFFDNNFNGLSDEIFDDVINFFDFPLEDVEANGVEEDWDAQLKCLEDPRVDVYTASSAGLCAKTQNEKPQLGMKFSASGNGISPIKQLGKAPGPVYGKTITHQNVTSNGKDLHQFQTYTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSSFSPLFSIPFILNSPAMQNHQRIAAADSDFGTNVAGNLSNKLKKQKKKDSSLLSDDVEMMRSSSPESGSPRKCMHCEVTKTPQWREGPVGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRAIQEPVRGSMLASSNLHGNAVG* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3374 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 296 - -
Gso11g3374 327 MobiDBLite consensus disorder prediction 209 241 - -
Gso11g3374 327 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Gso11g3374 327 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Gso11g3374 327 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Gso11g3374 327 Gene3D - 232 313 IPR013088 GO:0006355|GO:0008270
Gso11g3374 327 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Gso11g3374 327 PANTHER GATA TRANSCRIPTION FACTOR 26 305 - -
Gso11g3374 327 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Gso11g3374 327 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3374 Gso-Chr11 49612563 49617017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3374 15 305 C2C2-Gata Transcription Factor Family AT1G08010 37.627 9.23e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso11g3374 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3374 - - gmx:100813303 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1467 12 37585895 37590537 Gso11g3374 11 49612563 49617017 GST
Gso11g3374 11 49612563 49617017 Gso12g0627 12 5893999 5900266 PCT
Gso11g3374 11 49612563 49617017 Gso11g1502 11 17520332 17525227 PCT
Gso12g0627 12 5893999 5900266 Gso11g3374 11 49612563 49617017 PCT
Gso11g1502 11 17520332 17525227 Gso11g3374 11 49612563 49617017 PCT