Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3369 ATGACTTTTGCTAACTCAAGATCTGCAAGTTTTGAAGATGATCCGGAGCTAGCAAAATTTCCATCAACCAACGGTGACAATGGCGTTAAGATTAAATTTCACATTGACGGAACACAAATACCTGAGCCTAGTTCTAATATGGCTCAGAAAAAGGTGACAGGGAAGTTCTTGAAAGCTAGAATGTTGTCAAGAGTGTTCTCCGAAGACTACGACCGAGTAAATCGAAGAGTGTTAGATCCTAGGGGACAAACCATACACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGCATCTTTGTTTGTGGACCCTTTGTTCTTTTATCTTCCAGTGGTTCGAGATGAAGTGTGCATTGATATTGGAATAACTATTGAAGTTATCCTCACATTGGTAAGATCAGTGGTGGATGTCTTTTATGTGTTTCAGATTTTGATGAAGTTTCGGACGGCTTTTGTTGCTCCTTCTTCAAGAGTTTTTGGGAGAGGAGAACTTGTTGTAGGATATTATAAGATTGCATTTAGGTACCTCCGCAAGGGTTTCTGGTTAGATTTTGTTGCCGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTGTTATCCCAGCTCTTAGGGGTTCAACCATGGCAAACACAAAAAATGTCCTTCGCTTTTTCATCATTTTCCAATATATTCCGAGGCTAGTTTTGATTTTCCCACTTTCATCACAAATTGTTAAAGCTACAGGGGTTGTGACAGAAACGGCATGGGCAGGGGCTGCTTACAACCTTATGCTTTACATGCTGGCTAGCCATATTTTAGGGGCTTGCTGGTACCTTCTATCAATCGAACGTCAAGAAGCATGCTGGAGAAGTGTATGTGATTTGGAGAAGTCATTTTGTCAATATGGATTCTTTGACTGCCACAGGGTAAAAGATGCACTCAGGGTGTCCTGGTTTATGGCAAGTAATATCACAAATTTATGCTCACCAAATGCAAACGATGACTTCTATCAGTTTGGTATATACGCTGATGCCGTGACTTCCAAAGTTACATCCTCGGCATTCTTTAATAAGTACTTCTTTTGCCTGTGGTGGGGCCTGAGGAATTTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACACATGTTGGAGAAATAATGGTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCACTGCTAATTGGTAATATGCAGACATATCTCCAATCAACTACTGTTCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAACTAAGAGAAACTGTGCGAAAATATGACCAATACAAATGGTTGGCTACACGAGGAGTCGATGAAGAAGCTCTTCTTAAAGGACTTCCCGTGGATCTTCGGAGAGACATCAAGCGCCACCTCTGTCTTGATCTAGTCCGAGGAGTGCCATTATTTGATCAAATGGACGAGAGAATGCTGGACGCAATATGCGAGAGACTAAAGCCAGCATTGTGCACAGAGGGCACGTTTCTGGTCCGCGAGGGTGATCCTGTGAACGAGATGCTCTTCATAATCCGAGGCCATCTCGATTCTTACACCACCAACGGGGGCCGGGCCGGGTTCTTCAACTCGTGCCGTATTGGACCGGGCGATTTCTGCGGCGAGGAGCTTCTGACATGGGCCTTGGACCCACGGCCCAGTGTGATACTCCCCTCATCCACTCGAACAGTGAAATCCATCTCAGAAGTGGAGGCCTTTGCACTCATAGCCGAAGACCTGAAATTCGTTGCGTCACAGTTTAGACGACTACACAGCAAACAACTCAGACATAAGTTCAGGTTTTACTCTCACCACTGGAGAACTTGGGCTGCGTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGAAAGCAAGTGGCTGAACTAAGGGCAAGGGCAATTAATGTTAATATTGCTGAGCCTGAAACACCAACTAGGACAGATTCTGGCCTTGTAAGCTCCTTGCAGAAGCCAGCAGAACCTGATTTCTCTGTTGATGAATGA 2040 0.4441 MTFANSRSASFEDDPELAKFPSTNGDNGVKIKFHIDGTQIPEPSSNMAQKKVTGKFLKARMLSRVFSEDYDRVNRRVLDPRGQTIHRWNKIFLVACLASLFVDPLFFYLPVVRDEVCIDIGITIEVILTLVRSVVDVFYVFQILMKFRTAFVAPSSRVFGRGELVVGYYKIAFRYLRKGFWLDFVAALPLPQVLIWIVIPALRGSTMANTKNVLRFFIIFQYIPRLVLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSFCQYGFFDCHRVKDALRVSWFMASNITNLCSPNANDDFYQFGIYADAVTSKVTSSAFFNKYFFCLWWGLRNLSSLGQGLLTSTHVGEIMVAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRETVRKYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHHWRTWAACFIQAAWRRHKKRKQVAELRARAINVNIAEPETPTRTDSGLVSSLQKPAEPDFSVDE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3369 679 MobiDBLite consensus disorder prediction 654 679 - -
Gso11g3369 679 SUPERFAMILY cAMP-binding domain-like 412 608 IPR018490 -
Gso11g3369 679 Gene3D - 92 406 - -
Gso11g3369 679 SUPERFAMILY Voltage-gated potassium channels 79 404 - -
Gso11g3369 679 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g3369 679 Pfam Ion transport protein 88 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso11g3369 679 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 649 - -
Gso11g3369 679 ProSiteProfiles IQ motif profile. 618 647 IPR000048 GO:0005515
Gso11g3369 679 PANTHER - 4 649 - -
Gso11g3369 679 CDD CAP_ED 482 613 IPR000595 -
Gso11g3369 679 SMART cnmp_10 482 613 IPR000595 -
Gso11g3369 679 ProSiteProfiles cAMP/cGMP binding motif profile. 482 567 IPR000595 -
Gso11g3369 679 Gene3D Jelly Rolls 480 600 IPR014710 -
Gso11g3369 679 Gene3D Helix hairpin bin 409 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3369 Gso-Chr11 49549739 49554155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3369 54 678 Ion Channels AT2G28260 76.415 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3369 K05391 - gmx:100811847 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1473 12 37705824 37710362 Gso11g3369 11 49549739 49554155 GST
Gso11g3369 11 49549739 49554155 Gso12g0630 12 5942126 5948909 PCT
Gso12g0630 12 5942126 5948909 Gso11g3369 11 49549739 49554155 PCT