Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3363 ATGAGCAATTTAAGGCCTGAATCTCACGTAGCACAACAAATTAGGCGTGAAAAACTGAGAATCCAGAACAGTTATCAGCCTTCACACGAATTCCCTAACAATCTTGAACAGTTATCTTTACACCCGGGGTTTAACAACTTGGACCTTGTTCAAGTTAGGAATGTTAGAAATGCTAACATGCTTGATGAACTAGCTGTTTATTCATCAGAAATGCCAAACTTTTCTACCTCTTCGTCTGCTGCAAGGAACGCGTTGGAGTATCACCAAGAACAAGGTGCTGCAGCTGAACCCAGTAATAGGCTGCTGCTGATGAATCAGTATGGTTCATTTCCCCATTCCATGTCTGCAATTCATTCTTCCCATAAACAACAGTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTACCCCCCATCAAGGATCTGATTGGTTTGTAAACTATGCAAGCAATGCCAATTCTTTTTTGTCTGCTGAGCTCAACAACAATGTGTCTGCTTACAATGAACTTATGGATGTACATTGTAGCAATGCATCTGGTGAAATCAGTGGTAGAGAAATGCATAAGCAAGGTGTACTGCATCATAATTCTCCTCCTTCATCTCCACTTTATCAAAATGCTTTGCAAGATATTGTGAAGTCTGCTTCTTTCAGTGCTCACACTAGGCAAGACATGGCTTCACTGATGCAACAAAATGAACATAGCATTTGGGTGGGGAATGCTAGTGAAGCTGAGCTTCAACAACCAAGTTATGAAAGCCAGCCAAATCATGAGTTGCGTTTTGGGTGGACAAATCGAACAATTGCTTGTGATTCACTTCCTCAGAGCTTGTCCTTGTCACTTTCATCAAATGCACAACCTAAGCCTTCAGTTTCTCACCTAGAACAAGGGTCTGCGTCTGATGATCCTCAGTGTTTGAAGCATATGAAATCTATTGTTTCTAGAGATTGTGGGAAATCAGTTCAAGATCAGGTGGAAATACCTTCAAAGAGTACTACTACTATTACTTATCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTCAAGAGTTCAAGGTTCTTAAAGTCTGCTCAACAATTGTTGGATGAGATTTGCTGTCTATCTGATGCAAAATTTGGAAAATCATACGATGTTTCAAAGAGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCTGATACTGTCACTGGGGTTGCTGCAAAAGGTAGTAATTCAGGTTCTTCATCAACCACGTTGTATAATGTTTCAAAGGAAAATAGGGCCGATCCGGGAGTTGGAAGTAGCTTTGGTCTTTCCTCGCGGTCAGATTATCAACATAAGAAAGCAAAGCTACTGTACATGCAAGAGGAGGTTAGCCGGCAATGCAAACAGTACCATCTACAAATGCAAATGGTAGTTTCATCGTTCGAGTCTGTAGCGGGTCTTGGTTCTGCTACTCCTTACATCCCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCAATATCAGATCAGCTCAAGCTTATAAGTGAGGCCTTGGGAGAGGATTTGTCAATACCCTGCAGCACCAGTACTTGTAGTAATAAAGCTGACACTACTACTATGGCAAGGGTAAGATGCGGTAGTAGCATGGACCAAAGCTTCTTTCTGAAGAACAAATGTGTAAAGGGTACCACGGAACTTCTTGATGAACCCCCCCAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCTGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTAGTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTTCGAGTGTGGAAACCAATGGTTGAGGAAATACACACGCTTGAAACAAAAGCAACAGGCTCCAAGGACAATTGTGGTATAAACGAGGGAACTTCTTCTGCCACTGGAGGTGATACCAGCCACCCTAGAGCTTTGGGCAATATTGGTCTGAATTCAATACCTGAAACCCAATTTCAGGGTATAGATATGGGGTCATCCATAGCTGCAAATGCTGAGGAAAGTGGGTTAAACCCAGAACAATGGAGTCAAGAGAAGAGATCTAAATTGGAATGCCAAGTGACTTCAACCATGGATGGAACACTGATGGGGTTTGTGCCATACCGACACGGCGGCGTTGAGGTTGGTGGACTAGGGTCTGTGTCGCTAACATTGGGTCTTAGGCATGGCGTTGAAGGTGTACAAAACCAACAACAATTGCAAGAGGAGCAGCTTAGGCATGACGTTGGAGGGCACATGATCCATGAATTTGTGGGCTGA 2361 0.4333 MSNLRPESHVAQQIRREKLRIQNSYQPSHEFPNNLEQLSLHPGFNNLDLVQVRNVRNANMLDELAVYSSEMPNFSTSSSAARNALEYHQEQGAAAEPSNRLLLMNQYGSFPHSMSAIHSSHKQQCELRNLGNWRNSTPHQGSDWFVNYASNANSFLSAELNNNVSAYNELMDVHCSNASGEISGREMHKQGVLHHNSPPSSPLYQNALQDIVKSASFSAHTRQDMASLMQQNEHSIWVGNASEAELQQPSYESQPNHELRFGWTNRTIACDSLPQSLSLSLSSNAQPKPSVSHLEQGSASDDPQCLKHMKSIVSRDCGKSVQDQVEIPSKSTTTITYRSVGPLGPFTGYATILKSSRFLKSAQQLLDEICCLSDAKFGKSYDVSKRVSPEVSASTSADTVTGVAAKGSNSGSSSTTLYNVSKENRADPGVGSSFGLSSRSDYQHKKAKLLYMQEEVSRQCKQYHLQMQMVVSSFESVAGLGSATPYIPMALKSVSKHFRCLKNSISDQLKLISEALGEDLSIPCSTSTCSNKADTTTMARVRCGSSMDQSFFLKNKCVKGTTELLDEPPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHTLETKATGSKDNCGINEGTSSATGGDTSHPRALGNIGLNSIPETQFQGIDMGSSIAANAEESGLNPEQWSQEKRSKLECQVTSTMDGTLMGFVPYRHGGVEVGGLGSVSLTLGLRHGVEGVQNQQQLQEEQLRHDVGGHMIHEFVG* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3363 786 MobiDBLite consensus disorder prediction 398 424 - -
Gso11g3363 786 Pfam Associated with HOX 352 506 IPR006563 -
Gso11g3363 786 Pfam Homeobox KN domain 591 630 IPR008422 GO:0003677|GO:0006355
Gso11g3363 786 MobiDBLite consensus disorder prediction 650 668 - -
Gso11g3363 786 MobiDBLite consensus disorder prediction 281 302 - -
Gso11g3363 786 ProSiteProfiles 'Homeobox' domain profile. 571 634 IPR001356 GO:0003677
Gso11g3363 786 CDD homeodomain 574 635 IPR001356 GO:0003677
Gso11g3363 786 Gene3D - 577 639 - -
Gso11g3363 786 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 758 - -
Gso11g3363 786 SMART HOX_1 574 638 IPR001356 GO:0003677
Gso11g3363 786 MobiDBLite consensus disorder prediction 398 422 - -
Gso11g3363 786 SUPERFAMILY Homeodomain-like 576 640 IPR009057 -
Gso11g3363 786 MobiDBLite consensus disorder prediction 281 299 - -
Gso11g3363 786 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 30 758 - -
Gso11g3363 786 MobiDBLite consensus disorder prediction 650 669 - -
Gso11g3363 786 SMART prehox3 347 507 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3363 Gso-Chr11 49485655 49493022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3363 274 644 Homeobox Transcription Factor Family AT5G02030 43.700 1.63e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso11g3363 POX 9.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3363 - - gmx:100809720 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1479 12 37845270 37853015 Gso11g3363 11 49485655 49493022 GST
Gso11g3363 11 49485655 49493022 Gso12g0638 12 6053366 6060710 PCT
Gso11g3363 11 49485655 49493022 Gso11g1487 11 17303751 17311180 PCT
Gso12g0638 12 6053366 6060710 Gso11g3363 11 49485655 49493022 PCT
Gso11g1487 11 17303751 17311180 Gso11g3363 11 49485655 49493022 PCT