Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3360 ATGGCTGAGATTGAGGGTTCTCCCGGAAGCTCCATGCATGGAGTAACAGGAAGAGAACAAACATTTGTAGCCTCAGTTGCTTCTCCAATTGTCCCTACAGACACCACAGCCAAATTTGCTCTCCCAGTGGATTCAGAACACAAGGCCAAGGTTTTCAAACTCTTCTCCCTGGCCAATCCCCACATGAGAACCTTCCACCTTTCTTGGATCTCCTTCTTCACCTGCTTCGTCTCGACATTCGCAGCAGCACCTCTTGTGCCCATCATCCGCGACAACCTTAACCTCACCAAAAGCGACATTGGAAACGCCGGGGTTGCTTCTGTCTCCGGAAGCATCTTCTCAAGGCTCGCAATGGGTGCAGTCTGTGACATGTTGGGTCCACGCTATGGCTGCGCCTTCCTCATCATGCTTTCGGCCCCTACGGTGTTCTGCATGTCCTTTGTGAAAGATGCTGCGGGGTACATAGCGGTTCGGTTCTTGATTGGGTTCTCGTTGGCGACGTTTGTGTCGTGCCAGTACTGGATGAGCACGATGTTCAACAGTAAGATTATAGGGCTTGCGAATGGGACTGCTGCGGGGTGGGGGAACATGGGAGGTGGAGCCACTCAGCTCATAATGCCTTTGGTGTATGAGCTTATCAGAAGAGCTGGGGCTACTCCCTTCACTGCTTGGAGGATTGCCTTCTTTGTTCCGGGTTTCATGCATGTCATCATGGGGATTCTTGTCCTCACTCTAGGCCAGGACTTGCCTGATGGAAACCTCGGGGCCTTGCGGAAGAAGGGTGATGTAGCTAAAGACAAGTTTTCCAAGGTGCTATGGTATGCCATAACAAATTACAGGACATGGATTTTTGCTCTCCTCTATGGGTACTCCATGGGAGTTGAATTAACAACTGACAATGTCATTGCTGAGTATTTCTATGACAGATTTAATCTCAAGCTACACACTGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAACTTAGTTGCTCGACCTTTTGGTGGATATGCTTCAGATGTTGCAGCCAGGCTGTTTGGCATGAGGGGAAGACTCTGGACCCTTTGGATCCTCCAAACCTTAGGAGGGGTTTTCTGTATTTGGCTTGGCCGTGCCAATTCTCTTCCTATTGCTGTATTGGCCATGATCCTGTTCTCTATAGGAGCTCAAGCTGCATGTGGTGCAACTTTTGGCATCATTCCTTTCATCTCAAGAAGGTCTTTGGGGATCATATCAGGTCTAACTGGTGCAGGTGGAAACTTTGGGTCTGGCCTCACCCAATTGGTCTTCTTTTCAACCTCCAAATTCTCTACTGCCACAGGTCTCTCCTTGATGGGTGTAATGATAGTGGCTTGCACTCTACCAGTGAGTGTTGTTCACTTCCCACAGTGGGGTAGCATGTTTCTACCACCCTCAAAAGATGTCAGCAAATCCACTGAAGAATTCTATTACACCTCTGAATGGAATGAGGAAGAGAAGCAGAAGGGTTTGCACCAGCAAAGTCTCAAATTTGCTGAGAATAGCCGATCTGAGAGAGGAAAGCGAGTGGCTTCAGCACCAACACCTCCAAATGCAACTCCCACTCATGTCTAG 1593 0.4884 MAEIEGSPGSSMHGVTGREQTFVASVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLAMGAVCDMLGPRYGCAFLIMLSAPTVFCMSFVKDAAGYIAVRFLIGFSLATFVSCQYWMSTMFNSKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFVPGFMHVIMGILVLTLGQDLPDGNLGALRKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSKFSTATGLSLMGVMIVACTLPVSVVHFPQWGSMFLPPSKDVSKSTEEFYYTSEWNEEEKQKGLHQQSLKFAENSRSERGKRVASAPTPPNATPTHV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3360 530 Gene3D MFS general substrate transporter like domains 264 465 IPR036259 -
Gso11g3360 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Gso11g3360 530 MobiDBLite consensus disorder prediction 489 530 - -
Gso11g3360 530 MobiDBLite consensus disorder prediction 489 513 - -
Gso11g3360 530 SUPERFAMILY MFS general substrate transporter 59 458 IPR036259 -
Gso11g3360 530 CDD MFS_NRT2_like 65 456 IPR044772 GO:0015112
Gso11g3360 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Gso11g3360 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Gso11g3360 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Gso11g3360 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3360 Gso-Chr11 49427228 49429848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3360 1 530 Inorganic Solute Cotransporters AT5G60770 80.755 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3360 K02575 - gmx:547946 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1483 12 37997654 38000116 Gso11g3360 11 49427228 49429848 GST
Gso11g3360 11 49427228 49429848 Gso11g1477 11 17134621 17137784 PCT
Gso11g1477 11 17134621 17137784 Gso11g3360 11 49427228 49429848 PCT