Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3355 ATGGTGTCTGACGCCAGCAAGAAGAAGGCTGCGCAGAAGAAGGCGGCCGCAGCGGCCAAGAGAGGAGGCAAAGCAGCAGCTGCTGCTGCTTCGTCCAAAACGACGTCGTCGGAGAAGCTTGCCGACGGAATTAGGGACATTCAGATTTCCGATCGAACCTGCACCGGTGTCCTCTGCTCGCATCCTCTTTCCAGGGATATTAGGATAGAATCTATGTCAGTTACTTTCCATGGACATGATTTGATAGTTGATTCCGAATTGGAGCTTAATTACGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGGAAGTCTACCCTGCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGTTTGGAGAAAGAAGCTGAAGCTTTGGCAGCGCAGGATGATGGGGGTGGGGAAGCTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCCGCTGAAAATTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATTCTTTTACTTGATGAACCAACCAATCACCTTGACCTGGAAGCTTGTGTGTGGCTGGAAGAGAATCTGAAGAAGTTTGACCGTATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATTCACATGCAAAACAAGAAGCTGAAGCTCTACACTGGTAATTATGATCAATATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCGATGAAGGAATACATTGCTCGATTTGGTCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTGCAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACGCCAGATAATCTGATCTACAAGAAGCTTGACTTTGGTGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAACGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGGATCGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAAATTTCTGCCCTCCAGTTTATGATAAAAGAATACCCTGGAAACGAGGAGGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTATCCGGTAAAGCGCAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACCTGCTACTTTTGGATGAGCCAACGAATCATTTGGATATTGAAACAATTGACTCATTGGCCGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA 1782 0.4618 MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKTTSSEKLADGIRDIQISDRTCTGVLCSHPLSRDIRIESMSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLSLEKEAEALAAQDDGGGEALERIYERLEAIDASTAEKRAAENLFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKKLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLEPLDGMVRRHNHLRIAQFHQHLAEKLDLEISALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3355 593 CDD ABCF_EF-3 67 284 - -
Gso11g3355 593 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 593 - -
Gso11g3355 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 314 IPR027417 -
Gso11g3355 593 Gene3D - 353 591 IPR027417 -
Gso11g3355 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 593 IPR003439 GO:0005524
Gso11g3355 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 572 IPR027417 -
Gso11g3355 593 Gene3D - 67 331 IPR027417 -
Gso11g3355 593 SMART AAA_5 403 591 IPR003593 -
Gso11g3355 593 SMART AAA_5 91 293 IPR003593 -
Gso11g3355 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 67 307 IPR003439 GO:0005524
Gso11g3355 593 Coils Coil 285 305 - -
Gso11g3355 593 PANTHER - 1 593 - -
Gso11g3355 593 CDD ABCF_EF-3 378 569 - -
Gso11g3355 593 Pfam ABC transporter 278 354 IPR032781 -
Gso11g3355 593 Pfam ABC transporter 395 525 IPR003439 GO:0005524
Gso11g3355 593 Pfam ABC transporter 85 239 IPR003439 GO:0005524
Gso11g3355 593 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3355 Gso-Chr11 49375643 49379877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3355 87 265 Calmodulin-binding Proteins AT2G36910 27.568 8.10e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3355 K06185 - gmx:100798721 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1488 12 38055313 38059237 Gso11g3355 11 49375643 49379877 GST
Gso11g3355 11 49375643 49379877 Gso12g0647 12 6209089 6213779 PCT
Gso11g3355 11 49375643 49379877 Gso11g1473 11 17106930 17110618 PCT
Gso12g0647 12 6209089 6213779 Gso11g3355 11 49375643 49379877 PCT
Gso11g1473 11 17106930 17110618 Gso11g3355 11 49375643 49379877 PCT