Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3354 ATGCAGAGATCCGGTTATGGGTCCGACGGAATATACAGGTCACTCAGACCTTCCATCGTTTTTCCCAAAAACTCAAACCTCTCACTCGTTTCCCATCTTTTCAACAGAGTCGCAGCCTTTCCATCAAAACCAGCTCTTATCGATGCAGACTCTTCAGAAACACTTTCTTTCGCGGAACTCAAATTGCTAACTGTTAGGGTCGCTCACGGCCTCCTTCGTCTCGGAGTGACCAAAAACGACGTCGTTCTCTTCCTCGCTCCCAACGACATCCGCTACATCGTCTGCTTCCTCGCCGTCGCCTCTCTCGGCGCTGCCGTCACCACCGTCAACCCCGCCTACACCGCCGCCGAAGTCTCCAAACAGGCCAACGACTCCAAACCCAAACTTTTGGTAACCGTCGCCGAATTGTGGGACAAACTCGAACACCTCAAACTCCCCGCGGTCTTCCTACGTTGTTCCAACGCTCCCCACGCGCCATCCAGCGCGACTAGCTTCGACGCGCTGGTTCAACTCGCCGGGTCGGTGACCGAGTTTCCCGAAATTAAAATTAAACAGAGTGACACTGCGGCACTGTTGTATTCTTCGGGTACCACCGGCTTGAGCAAGGGCGTGGTTCTCACGCACGGGAACTTCGTCGCGGCGTCGTTGATGATTGGCTTCGACGATGATTTGGCAGGGGTGTTGCATAGCGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTTTTTGGTTTGATGGTCATTTCGTACGGACAGCTTCAGAGGGGTAGTGCGGTTGTGTCTCTCAAGAAGTTTGAGTTTGAATTGGTTCTGAAGACCATTGAGAAGTTTAAGGTGACGCATTTGTGGGTTGTGCCTCCGATTATTCTTGCTCTCGCGAAACACGGTTTGGTTGATAAGTATGATCTTTCGTCTCTCAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGAAGGAGTGTGCTAAACGTTTTCCTCATGCCATTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGAATTGTTTCTGTGGAGAATGCAAGGATGGGAATTCGGAATAGTGGCTCTACGGGAATGCTTGTCGCCGGAATGGAGGCTCAAGTAGTTAGTGTGGATACTCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGCCCTAATATGATGCAAGGTTATCACAACAATCCACAAGCCACAAGATTGACTATGGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTTTGTTGTTGACCGAATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCGCCGGCAGAACTTGAAGGGCTTCTGGTTTCTCATGCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGTTCACCCAATAGTTCACTCACAGAGGAAGATGTTCAAAAATTTATTGCTAAGCAGGTAGCGCCTTTCAAAAGAATAAGAAGAGTGACATTCATCAATGCTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1623 0.4831 MQRSGYGSDGIYRSLRPSIVFPKNSNLSLVSHLFNRVAAFPSKPALIDADSSETLSFAELKLLTVRVAHGLLRLGVTKNDVVLFLAPNDIRYIVCFLAVASLGAAVTTVNPAYTAAEVSKQANDSKPKLLVTVAELWDKLEHLKLPAVFLRCSNAPHAPSSATSFDALVQLAGSVTEFPEIKIKQSDTAALLYSSGTTGLSKGVVLTHGNFVAASLMIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKFKVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQGYGMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHAEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIAKQVAPFKRIRRVTFINAVPKTASGKILRRELIEKVRSKI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3354 540 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Gso11g3354 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 539 - -
Gso11g3354 540 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Gso11g3354 540 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 539 - -
Gso11g3354 540 CDD 4CL 21 532 - -
Gso11g3354 540 Gene3D - 438 539 IPR045851 -
Gso11g3354 540 SUPERFAMILY Acetyl-CoA synthetase-like 18 538 - -
Gso11g3354 540 Pfam AMP-binding enzyme 35 442 IPR000873 -
Gso11g3354 540 Gene3D - 9 437 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3354 Gso-Chr11 49341553 49346755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3354 1 540 Monolignol Biosynthesis Gene Families AT4G05160 65.993 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3354 K01904 - gmx:100797843 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3354 11 49341553 49346755 Gso11g1471 11 17073401 17079366 PCT
Gso11g1471 11 17073401 17079366 Gso11g3354 11 49341553 49346755 PCT