Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3345 ATGGATGTTCACGAAGACACACTCAAGTACATGAATGATTTTGAGCTGTACGACTTTGTTGCTGATTCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGATCATTTCGGTTCTGACCTTATCAATGATTGCTTTGTTAACAATCAGCAGCAGCCCCTTTTATCTCCTGCAAACCCTTTTGATCAGAACAACAACAATAATAATAATGATGCTGTGAATGTCTATGATCCAAGCTCCACATTCAGTTCCTTCTCTTGTTTTGATGGGGAGCTCAAGGGAGAAGGAGAAGAAGAAAATGATGGTGAGCATTCTTCTGGGACAACGACAACGAAGAATGCTGATGGCAAACCGAAACTAAAAACTGATAGGTCAAAAACTCTCATTTCTGAAAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTCCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTGTCATACGTGCATGACCTTCAAGCTCAAGCTAGGAAGCTGAAGGCAGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGTGATGGCCCGTAATATTAGTCATCCAAACTGCAAGAAAATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTACTTAGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCTTCACTGTACAGGGCTCTCGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGGTGAGAGTTTTCTACTTACATTTACGTTGAATGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGA 966 0.413 MDVHEDTLKYMNDFELYDFVADSNFDQFINLIRGENEDANCDHFGSDLINDCFVNNQQQPLLSPANPFDQNNNNNNNDAVNVYDPSSTFSSFSCFDGELKGEGEEENDGEHSSGTTTTKNADGKPKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVQVMARNISHPNCKKIMQVDMFQVEERGYLAKIVCNKGEGVAASLYRALESLAGFNVQNSNLATVGESFLLTFTLNVKGTEQEINLPNLKLWVTGALLNQGFEFVASFPA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3345 321 MobiDBLite consensus disorder prediction 100 133 - -
Gso11g3345 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 317 - -
Gso11g3345 321 Gene3D - 121 195 IPR036638 GO:0046983
Gso11g3345 321 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 317 - -
Gso11g3345 321 SMART finulus 135 184 IPR011598 GO:0046983
Gso11g3345 321 MobiDBLite consensus disorder prediction 61 82 - -
Gso11g3345 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 202 IPR036638 GO:0046983
Gso11g3345 321 Pfam Helix-loop-helix DNA-binding domain 136 179 IPR011598 GO:0046983
Gso11g3345 321 Coils Coil 175 195 - -
Gso11g3345 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3345 Gso-Chr11 49241973 49243752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3345 1 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.160 6.05e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3345 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3345 - - gmx:100805451 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1497 12 38286926 38288757 Gso11g3345 11 49241973 49243752 GST
Gso11g3345 11 49241973 49243752 Gso11g1455 11 16877100 16878738 PCT
Gso11g1455 11 16877100 16878738 Gso11g3345 11 49241973 49243752 PCT