Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3343 ATGTTGTCACAAATGGACATGGAGGAGCTTGTCTCATGTAACAACAACGATGCCACCAACATAGCCAAAGGCAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGTGCCGTCGTTCCTACCACCACCACCATCACCACTGTCACTGCCGCTACCACCCCCATCATGACATCTAGCTGTTCAAGTGCTTCTTGTGGCGGTGGTTCTTCTTCATCCACAACCTTTGAGGAGGAAGAGGAAGACATGGCTAATTGTTTGATTCTCCTAGCACAAGGAAAAGTAGGAGGGGACCCTCCTCATCGTCACAAGGACTTATATGGTAGTGATGTTAAGACAGAGAAGCTGGGTAGCACCAAAGTCGATCATTTCTATGTTTATGAGTGCAAAACATGCAACCGAACATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGGTGGAGGAGAAAAAGTCGTCATCACCACCACTGTCGTTGCCGCCGCCGCCACCACCACCACCACCGTCTTCGTCGTCACTATTTAATTTTGAAGAAGCAAAACAAAGTCATCACATGAAGAATATTATTAGCCCTTCTGTTTCCCTTCAATTAGGGTGTGGCAATAATAACAAGGTTGGTTTAAATTTCCATGGCAACAAATCCAAGATTCACGAGTGTTCCATCTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTACCAATAATAACAATATTGTTCAGACAACAACAACAACTTCTAATGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAGAGTTGGATCTTAACCTCCCGGCGCCGGAAGACGATCTCCGGGACTCCAAATTTCAGTTTCCGGCGACTCAGAATTCTATGATGCGGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 948 0.4736 MLSQMDMEELVSCNNNDATNIAKGKRTKRRLRPLSPCAVVPTTTTITTVTAATTPIMTSSCSSASCGGGSSSSTTFEEEEEDMANCLILLAQGKVGGDPPHRHKDLYGSDVKTEKLGSTKVDHFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSSSPPLSLPPPPPPPPPSSSSLFNFEEAKQSHHMKNIISPSVSLQLGCGNNNKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASTNNNNIVQTTTTTSNGAVDVKPRNVLELDLNLPAPEDDLRDSKFQFPATQNSMMRSAAPALVGCHY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3343 315 Pfam C2H2-type zinc finger 126 152 - -
Gso11g3343 315 Pfam C2H2-type zinc finger 224 248 - -
Gso11g3343 315 SUPERFAMILY beta-beta-alpha zinc fingers 126 246 IPR036236 -
Gso11g3343 315 MobiDBLite consensus disorder prediction 162 178 - -
Gso11g3343 315 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Gso11g3343 315 PANTHER ZINC FINGER PROTEIN ZAT5 1 315 - -
Gso11g3343 315 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Gso11g3343 315 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 315 - -
Gso11g3343 315 MobiDBLite consensus disorder prediction 143 181 - -
Gso11g3343 315 Gene3D Classic Zinc Finger 210 273 - -
Gso11g3343 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Gso11g3343 315 SMART c2h2final6 127 149 IPR013087 -
Gso11g3343 315 SMART c2h2final6 224 246 IPR013087 -
Gso11g3343 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3343 Gso-Chr11 49217803 49219166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3343 16 315 C2H2 Transcription Factor Family AT2G28200 43.590 1.36e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3343 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3343 - - gmx:100794834 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1500 12 38316887 38318171 Gso11g3343 11 49217803 49219166 GST
Gso11g3343 11 49217803 49219166 Gso12g0663 12 6479416 6480728 PCT
Gso11g3343 11 49217803 49219166 Gso11g1453 11 16852925 16854306 PCT
Gso12g0663 12 6479416 6480728 Gso11g3343 11 49217803 49219166 PCT
Gso11g1453 11 16852925 16854306 Gso11g3343 11 49217803 49219166 PCT