Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3342 ATGATTTCAAGGGCCACATCTAGCTTCCCAAGTGTCCACCACCAAGGGCTTCAGATGTTCCCTGACCCGGAAGGTTTTGTGTCACCCTCTGAGGAATCAGGCTCATCAGGTGTTATTCTCTCGCCAAATCAAAGCCTACCCGAGCCAACTTCCATGGCCATATCCAGCATGAACTCCATTATCCAAGAAATCATAGTCACTGCCACATCAATGATGTTCACCTGCCAACAGATGGCTCTCACTACCCCTCCAGGTACTACTAACAAATTGCACCAGCAGAACAAGTCGTTGTTGCCTCACTCAAATAATAATTCTGGCACAAATACAAGTGTACTAATTGGTAACAACATAGGCACAGATAATATTAGTGACCATCAGGGTTTGTTTTCTAGTACTGAGTCAGAGACACTTGACTGGTTTAGTACTGAAAGCTATAACAATAACATTGATAATAGCAATAGCAATATTAGTAAGGTTGCAAATATCAGTAGTGAAAACAATATTATTAGTAGAGGAAGGGATGAACATGAACCTAATGAAGAAGAAGGGTACTATAGAGGGGTTTCACCGAAGATGAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACTCACTATTGCCAAGTTTGTGGCAAAGGGTTCGAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCTTTGAGTAACCCAATTAAGAACAAAGGGAACTTATTGGAAGGGGGAAGAGAGTGTTTGATGAGTACTGTGAAGCCAAAGTATTCGTGTCCTCAAGAAGGGTGCAGGTGGAACCAGAGACATGTCAAGTTTCAGCCTTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGAAGCCATTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAATTCTCGGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCACGTGTGGAACCTCGTTTTCTAGAAAAGACAAGCTTATGGGTCATGTGGCTTTGTTCGTGGGGCACCAACCAGCAGCAGCTATCAACAATAGTAATGCTCTCTCTTTCTCGGCCAAATTAGAGCAGCAGCACACATTGCAAATGCAGATTGAGGATAGCTCAAGATGA 1176 0.4388 MISRATSSFPSVHHQGLQMFPDPEGFVSPSEESGSSGVILSPNQSLPEPTSMAISSMNSIIQEIIVTATSMMFTCQQMALTTPPGTTNKLHQQNKSLLPHSNNNSGTNTSVLIGNNIGTDNISDHQGLFSSTESETLDWFSTESYNNNIDNSNSNISKVANISSENNIISRGRDEHEPNEEEGYYRGVSPKMNSDIIELDAADLLAKYTHYCQVCGKGFERDANLRMHMRAHGDEYKTNAALSNPIKNKGNLLEGGRECLMSTVKPKYSCPQEGCRWNQRHVKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCTCGTSFSRKDKLMGHVALFVGHQPAAAINNSNALSFSAKLEQQHTLQMQIEDSSR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3342 391 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Gso11g3342 391 Gene3D Classic Zinc Finger 304 354 - -
Gso11g3342 391 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 37 368 IPR044300 GO:0010044|GO:0010447
Gso11g3342 391 SUPERFAMILY beta-beta-alpha zinc fingers 208 235 IPR036236 -
Gso11g3342 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
Gso11g3342 391 SMART c2h2final6 268 301 IPR013087 -
Gso11g3342 391 SMART c2h2final6 210 232 IPR013087 -
Gso11g3342 391 SMART c2h2final6 306 328 IPR013087 -
Gso11g3342 391 MobiDBLite consensus disorder prediction 1 38 - -
Gso11g3342 391 Gene3D Classic Zinc Finger 189 255 - -
Gso11g3342 391 PANTHER OS08G0562300 PROTEIN 37 368 - -
Gso11g3342 391 Pfam C2H2-type zinc finger 210 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3342 Gso-Chr11 49208510 49210733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3342 50 361 C2H2 Transcription Factor Family AT5G22890 49.216 3.90e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3342 zf-C2H2_6 0.00032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3342 - - gsj:114375424 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1501 12 38330328 38332792 Gso11g3342 11 49208510 49210733 GST
Gso11g3342 11 49208510 49210733 Gso12g0665 12 6495143 6496474 PCT
Gso11g3342 11 49208510 49210733 Gso11g1450 11 16832581 16834578 PCT
Gso12g0665 12 6495143 6496474 Gso11g3342 11 49208510 49210733 PCT
Gso11g1450 11 16832581 16834578 Gso11g3342 11 49208510 49210733 PCT