Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3338 ATGGCCAAGGGCGCCGATTCCGACGAGTTCGTGGTGCTTTCTAGGGTTCGTACGGGTCTCAAGAGAGAGTTCGCATTCGCCATGAAGGCCCAATCTGAGATATGCGGCGGTTCTCTGGGCCGAACGCGTGCCAGCAAGAACCGGGTCGAGGCTCCGGTTCAGCCTGCCTCGGCCCGGAAAAGGTCGAGGAAGTCCGAGGAGCCGAAAACCTCGGAGGATGCTATGAGCGAGGAAGAGGTTAAGAGCGACGTGGTGGATCTTCAGAGCGATGATAATAATCACGTGGGAGAATCAGAATCCGCGGCAATGCAGGTTTGTGAAGAGGAACCGAAGATGTTGGAACCTAAACCTGAACCTGTTATCAGCGAAGAGGAACCGAAGGTGTTGGATGATGTTATCAATGAAGAGGAAGCTGTTGTGGCCGAGACGTTGAAGGGAGAGGAGCCTATCGTGGCTGAGACATTGAAGGAAGAGGTTGTGGATGAGATGGCAGAACAACCCCTTTGTAAAGAGGAATCGGAGAAGGGTGTTTCGGATGAGATGGCAGAACAACCCCTTTGTGAAGAGGAACCGGAGAAAGGTGGTGTTTCGGAGGAGAAAGATTCTAATGGGGTAGCCCTAGCTTTGGTTAATGATGATGGTGATGAGGGGAATAAGAAGAAGAGGAGAATGAAGAAGCGGTTGGAGATGCCTCAGTCCGAGAGAAGGTTTACGCGGTCGGCATTGAAGGTAAAATCTGAGGAAACAAATGATGTGGAACATGTTGGTGTGGCTGGAATTGATGATGATGGTGTTAAGGGGGAAACTGAAGCCTCAGCTGAGGCTTCGTTGTTAATGACTCCTCCTAGTTCGGCAAAATTTTCGAATTCTAGGTTGAAGAAGTTTCCTTCCAAGTTGAAGGATCTTCTGGCAACAGGGATTCTTGAGGGGCTGCCAGTGATGTACATGAAGGGAGCGAAGACACGTTGGAAAGCCGGAGAAAAGGGGCTTCAAGGAGTGATTCAAGACTCCGGTGTTTTGTGCTTTTGTAAGATTTGTAATGGGGTTGAGGTTGTCACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAACAAGCGGCCCCCTGAGTATATTTACATCCATGATGGGAATTGTGGAAAAACTCTCCGTGATGTCATGAATGCCTGCTGCTGCTGCGATTTTCCATTGGAGTCCATGGATGAAGCCGTCCAAAAGCTCCTTGGTGACTTCACAATGAAGAAATCTTCCATCTGTTTGAACTGCAGAGGAGCATGCAAGGGCGTGTCAAAGCTTGTATGTGATTTGTGCTTAGCAAGCCCCCCTCAAACAGCCATGGCTAGCCGCAAAGTAATTTCACAACCAGTTCAACCCAGATCACCAGAACCAGTTGTGATTCAAAAATCATTAGACAATGAAGTACAGCCAAATTCATTAGACAATGAGGTCCCGCCAAATTCTTTAGACAATGAGGTGCAGCCAAATTCATTAGACACTGGGGTGCAGCCAAAATCGTTTAGCAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATTTGCGCTTGCATAAGTTGGTATTTGAAGCAGATGTTTTGCCAGATGGAACTGAACTAGCCTACTATGCTCATGGGCAGAAACTGTTGGTTGGTTACAAAAAGGGATGTGGAATTTTTTGTACCTGCTGCAATGAGCAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCTTACCTGCACATATACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGATCATCGGAGGTTTTCCAACAATGACAATGATGATCTCTGCATCATATGCGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGATTGTGTCCCTTTACCATGCATTCCTAGTGGTAGTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGACAGGCATGGGCAACATGAGGTGAATGCTCTGGCGGCTGCTGGAAGGATTGCAGGCCCTGATATTTTGGAACTGATGAACAAAAGATGCATTCGTGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTATGCAGTCGCCCCAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGAGCATAACATGGAGAACCTAGAGAAATTGCCTGAAGGAAATTGGTTCTGTAGTGGAAATTGCAGTCATATTCATACTGCTCTGACAGATCTGGTGGCTTCTAAGGAGAAGGATGTCCCAGATCCCCTTCTAAGTTTGATTAAAAAGAAGCATGAAGAAAAAAGTTTAGAAATTGGAGCTGGTCTAGATGTTAAATGGAGGGTTATGAACTGGAAATTAGATTCTGATTCTGATGATTCTGTTGAAACTAGGAAATTGCTTTCAAAAGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGTGATTTCATTCCAACCATGTTGTTTGGAAGGAACATTCGTGGTCAGGATTTTAGTGGAATATACTGTGCAGTTCTTACTGTCAATGGGGATATCGTGTCTGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATAGCTGAGCTTCCATTGGTTGCGACAACTGCTGATCATCAAGGACAGGGTTATTTTCAGTGCCTGTTTTCTTGTATTGAGACGCTACTTGGATCTTTAAATGTGAAAAACCTTGTCCTACCAGCTGCCGATGAAGCTGAGTCAATATGGACTGGTAAATTTGGGTTTACAAAGCTACCCCAAGATGAGATAAACAAATATAAGAAATTTTATCGCATGATGATATTTCAAGGGACCTCAGTGTTACAGAAGCCTGTTCCTGAAACACTCTGA 2970 0.4549 MAKGADSDEFVVLSRVRTGLKREFAFAMKAQSEICGGSLGRTRASKNRVEAPVQPASARKRSRKSEEPKTSEDAMSEEEVKSDVVDLQSDDNNHVGESESAAMQVCEEEPKMLEPKPEPVISEEEPKVLDDVINEEEAVVAETLKGEEPIVAETLKEEVVDEMAEQPLCKEESEKGVSDEMAEQPLCEEEPEKGGVSEEKDSNGVALALVNDDGDEGNKKKRRMKKRLEMPQSERRFTRSALKVKSEETNDVEHVGVAGIDDDGVKGETEASAEASLLMTPPSSAKFSNSRLKKFPSKLKDLLATGILEGLPVMYMKGAKTRWKAGEKGLQGVIQDSGVLCFCKICNGVEVVTPTVFELHAGSANKRPPEYIYIHDGNCGKTLRDVMNACCCCDFPLESMDEAVQKLLGDFTMKKSSICLNCRGACKGVSKLVCDLCLASPPQTAMASRKVISQPVQPRSPEPVVIQKSLDNEVQPNSLDNEVPPNSLDNEVQPNSLDTGVQPKSFSNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTELAYYAHGQKLLVGYKKGCGIFCTCCNEQVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDHRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGSWYCKYCQNVFQKDRHGQHEVNALAAAGRIAGPDILELMNKRCIRVVKTVEVDHGGCALCSRPNFSKSFGPRTVIICDQCEKEYHVGCLKEHNMENLEKLPEGNWFCSGNCSHIHTALTDLVASKEKDVPDPLLSLIKKKHEEKSLEIGAGLDVKWRVMNWKLDSDSDDSVETRKLLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGIYCAVLTVNGDIVSAGVFRVFGSEIAELPLVATTADHQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLPQDEINKYKKFYRMMIFQGTSVLQKPVPETL* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3338 989 SMART PHD_3 625 666 IPR001965 -
Gso11g3338 989 SMART PHD_3 714 770 IPR001965 -
Gso11g3338 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 772 IPR013083 -
Gso11g3338 989 PANTHER AUTOIMMUNE REGULATOR 1 984 - -
Gso11g3338 989 PANTHER AUTOIMMUNE REGULATOR 1 984 - -
Gso11g3338 989 MobiDBLite consensus disorder prediction 57 93 - -
Gso11g3338 989 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 870 963 IPR016181 -
Gso11g3338 989 CDD PHD1_AIRE 625 665 - -
Gso11g3338 989 MobiDBLite consensus disorder prediction 35 132 - -
Gso11g3338 989 Pfam Tify domain binding domain 332 390 IPR032308 -
Gso11g3338 989 Pfam Tify domain binding domain 558 606 IPR032308 -
Gso11g3338 989 MobiDBLite consensus disorder prediction 164 240 - -
Gso11g3338 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 690 IPR013083 -
Gso11g3338 989 MobiDBLite consensus disorder prediction 109 132 - -
Gso11g3338 989 ProSitePatterns Zinc finger PHD-type signature. 626 665 IPR019786 -
Gso11g3338 989 MobiDBLite consensus disorder prediction 213 240 - -
Gso11g3338 989 Gene3D - 812 983 - -
Gso11g3338 989 ProSiteProfiles Zinc finger PHD-type profile. 623 668 IPR019787 -
Gso11g3338 989 SUPERFAMILY FYVE/PHD zinc finger 708 766 IPR011011 -
Gso11g3338 989 SUPERFAMILY FYVE/PHD zinc finger 612 667 IPR011011 -
Gso11g3338 989 MobiDBLite consensus disorder prediction 473 522 - -
Gso11g3338 989 MobiDBLite consensus disorder prediction 473 517 - -
Gso11g3338 989 MobiDBLite consensus disorder prediction 164 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3338 Gso-Chr11 49182485 49189430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3338 220 985 PHD Transcription Factor Family AT2G36720 41.892 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3338 - - gmx:100804381 1984.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1503 12 38350162 38357091 Gso11g3338 11 49182485 49189430 GST