Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3337 ATGGAAATGGAATCCCATTCCCAGCCATCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCACCTTCGGTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCAGGTAGTCAGACAAGTTCAAGGAAGACCCGGGGAGGTACAAAGGAGTGATGGGTTGGTTGTGGACCTCTCACAGGAAAATTTGCCCGACAGCAGCAACCAGAGGGAAGAGCATATGATAGAGGATGCAGTTTTGGGTGAGAATGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATGATGAACAGGAGGAATTAAACAATTCTAGCCGTGAAAACTCCTCTGATTTTGGAGTAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAATGGATGAATAGTGGTCCTAGGGATCATGCATCAAATCATTCCCAAGGAAATAATTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTGCCATAAGGGAGTGGGTACAGATGAGCAGCCAGCAGAGAGGCGTTTCTTCTGGGGAAAGTAGGGAAGAACAATCTTCTGAAATTGGTACCCAAATCGAATGCGTTCGTGATGGATTTGTTGTTAATCAGAATGAGGGCCAACACCAAACTGAGCATACACGGCGGGGAATCCGTAAATTACGTGGTCGACAGGTGTTTCTTGATATGCTTAAGAAAGCTGAGATGGAAAGGCAAAGAGAAGTTCAAGAATTGTTGAACCATCGAGTTGTATCTCATTTTCCCCATCGCAATCGCATACAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGACAGATCGATTGATAATAACAAGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAAGGTTTCGTTTTTAGAAAGGACAATTTTGGTTGCAGTCAAGCAACCAGTAACACATCTGATACCTCATCTGAGGACGATATTGATGTTAATACTATTGAAGAAACTGGAGCTAGCAGCTCACAAGCAGTCCCAACTGTACATTCTCAACAATCTGAACCTAATAACAGGGTAAGTGACGGACTTGAGATATCAGGTGATCAGATTTGTTCACAAGGAACCATTTGTGAGAATTTAGATCGGCAAGGCTCTTCTGCTCATGTGGAAACAAGAGATTTGGAATCATCTTCTAGTACCAGGTTTGAAAGAGAAGATGGCACTGGAGGAAATGTTGATACGATGCCAACTGAAGATCCTTCTAATGGCCTTACTCAACCAAGCTTGCAAATTGAAGATACAGACCAAGGCAATATGCATGAGTTAAGTGAGGTACATACTGAGCAATCTCAGCGGGGTGATATAATTAATGATGAAAGCGATATAGTTGATGATGTAGATTTGATTGAATCTATTGCTCTGGAAGGGGAGCAACAGGAAGAAGTTATTATTGAAAATGACGGAAGTGTCTGGCATCAAAGTGTGGATGATAATCAGCTCGGTAGCACAACAAATGAATGGCCCCAAAACATATTGGGAGGTGAAGATGGAGAAAATTCTCGTATGCAGGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAAGCTGTGGAAATTTGGTTAGGAGGACCATCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGATGACAATGTATACAGTGTTGAGCTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTGGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTAATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAATGGGAGCTGCAAGAGACAACCCCTTCCCCCTTGGCAGAACAAGTCTCACGGCAACACAGTAGGGATCCAATAGTTAGTCCTCAGGCTACTGTTAATAGCTCACTTGACCGACCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCACGTCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCTTAGGAATTGTGCGTTCATTTGCAGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAACTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTAAATCGCTCAACTGGTTCATCAGATGACCAAGTGGAATTCATCACAGGAATACATGACGGTGTTTCAACAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCTAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGAGCTTATTCTATACAATAG 2505 0.4359 MEMESHSQPSGRQGDGGRGGTRSPSVLQMWREIEDEQVVRQVQGRPGEVQRSDGLVVDLSQENLPDSSNQREEHMIEDAVLGENDSETWSQSQNEFHDEQEELNNSSRENSSDFGVVERERVRQIFREWMNSGPRDHASNHSQGNNSRGEWLGETEQERVSAIREWVQMSSQQRGVSSGESREEQSSEIGTQIECVRDGFVVNQNEGQHQTEHTRRGIRKLRGRQVFLDMLKKAEMERQREVQELLNHRVVSHFPHRNRIQALLRGRFLRNDRSIDNNKSTSIAESELGLLRQKQTVSGLREGFVFRKDNFGCSQATSNTSDTSSEDDIDVNTIEETGASSSQAVPTVHSQQSEPNNRVSDGLEISGDQICSQGTICENLDRQGSSAHVETRDLESSSSTRFEREDGTGGNVDTMPTEDPSNGLTQPSLQIEDTDQGNMHELSEVHTEQSQRGDIINDESDIVDDVDLIESIALEGEQQEEVIIENDGSVWHQSVDDNQLGSTTNEWPQNILGGEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLGSSFRESLDQLIQSYVERQGHAHVEWELQETTPSPLAEQVSRQHSRDPIVSPQATVNSSLDRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSDDQVEFITGIHDGVSTDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCQAPVVEVIRAYSIQ* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3337 834 MobiDBLite consensus disorder prediction 385 408 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 620 649 - -
Gso11g3337 834 ProSiteProfiles Zinc finger RING-type profile. 782 821 IPR001841 -
Gso11g3337 834 SUPERFAMILY RING/U-box 781 827 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 92 106 - -
Gso11g3337 834 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 834 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 130 155 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 1 28 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 135 151 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 382 429 - -
Gso11g3337 834 Coils Coil 702 729 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 414 429 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 337 364 - -
Gso11g3337 834 CDD mRING-HC-C3HC5_NEU1 782 820 - -
Gso11g3337 834 Pfam Zinc finger, C3HC4 type (RING finger) 779 826 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 67 81 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 618 669 - -
Gso11g3337 834 PANTHER PROTEIN, PUTATIVE-RELATED 4 834 - -
Gso11g3337 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 764 832 IPR013083 -
Gso11g3337 834 MobiDBLite consensus disorder prediction 170 189 - -
Gso11g3337 834 MobiDBLite consensus disorder prediction 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3337 Gso-Chr11 49161963 49173492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3337 782 828 C3H Transcription Factor Family AT3G06140 38.298 6.28e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3337 - - gmx:100803851 1553.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1504 12 38374952 38380101 Gso11g3337 11 49161963 49173492 GST
Gso11g3337 11 49161963 49173492 Gso12g0671 12 6567238 6572856 PCT
Gso11g3337 11 49161963 49173492 Gso11g1446 11 16771732 16777084 PCT
Gso12g0671 12 6567238 6572856 Gso11g3337 11 49161963 49173492 PCT
Gso11g1446 11 16771732 16777084 Gso11g3337 11 49161963 49173492 PCT