Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3333 ATGGCGGAGGACCGGAGTGAGGCGAGTGATTACAGTTCGGAGGACGAAGGAACCGAAGATTACAGGCGTGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAGAATGGGAGCTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGACACTCACAAATCGCGATTTGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTTAAACAAATTGCTGACGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCAGGACCTAATGGCCAACATGTTTGTATGGTTTTTGAATTCCTTGGGGATAATCTTCTCACACTTATCAAGTATAGTGATTATCGAGGGGTTCCCCTTCCCATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCTTGCTTTTGTCTCCAATCGATCCATCTAAGGATCCTAGAAAATTAGGCATTCCACTTATCCTTCCAAACACGAAGGATAAGACTGTGACCAAGAATGGGGCAACAATAGCAAATAAAAGTTTGAATGGAGATCTGACCAAGAATCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAAGCTGTGCTGGGAGGGAAAATGCTGAGGAAGCTGAGGAGGATTCCAAAGCATCTGATGAGCAAGATGATTGTAGTAATGATGTGAAACCTAGTGTAGAATCTGGTGAAGTTAAACCTAATAGTCCTGTGAGGAAAGATGAATCAACAAAGACTTCTGAAAATAAAGATATTCCACAAGGAAGTCATGGTAATAGGAGAGGTAGCCGCTCTACAAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTACTTCTTGGATCTAAATATTCAACTCCAGCAGATCTGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCATCTGGTGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGACGCTATTCCCGAGATTTTTTTAATAGATATGGCGATTTGAGGCACATTCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGACGGAGAAGTATGATTTCAGTGATCAAGAAGCAAATAACATGACCGACTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACTGCTGCTCAATGCCTTCAGCATCCTTGGTTCAGTGCAGGTCCCTTCACTCTCGAGCCCTCATTGACTGCTGTGAAGCAAGATGATGCTATTGAAGGGGAAATATCTGAAAAAATGCAGAGGGAAAAGGCTGAGCAGGAGGCTGTGGAAGTTGGCATGGGGAATATGGCCATAGATGGAAATCCAAAGCCACTCAAAGAGTTCCAATCTATGAAGCCATCAGAATAG 1641 0.4296 MAEDRSEASDYSSEDEGTEDYRRGGYHAVRIGDTFKNGSYVVQSKLGWGHFSTVWLAWDTHKSRFVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKLGIPLILPNTKDKTVTKNGATIANKSLNGDLTKNQKKKLRKKAKKAAQSCAGRENAEEAEEDSKASDEQDDCSNDVKPSVESGEVKPNSPVRKDESTKTSENKDIPQGSHGNRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLTEKYDFSDQEANNMTDFLLPLLDFVPEKRPTAAQCLQHPWFSAGPFTLEPSLTAVKQDDAIEGEISEKMQREKAEQEAVEVGMGNMAIDGNPKPLKEFQSMKPSE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3333 546 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3333 546 CDD STKc_SRPK 29 482 - -
Gso11g3333 546 MobiDBLite consensus disorder prediction 523 546 - -
Gso11g3333 546 Gene3D Transferase(Phosphotransferase) domain 1 317 482 - -
Gso11g3333 546 MobiDBLite consensus disorder prediction 208 310 - -
Gso11g3333 546 Gene3D Phosphorylase Kinase; domain 1 26 125 - -
Gso11g3333 546 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g3333 546 SUPERFAMILY Protein kinase-like (PK-like) 35 491 IPR011009 -
Gso11g3333 546 PANTHER SERINE KINASE-LIKE PROTEIN 8 543 - -
Gso11g3333 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Gso11g3333 546 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3333 546 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Gso11g3333 546 Gene3D Transferase(Phosphotransferase) domain 1 94 181 - -
Gso11g3333 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 543 - -
Gso11g3333 546 MobiDBLite consensus disorder prediction 278 292 - -
Gso11g3333 546 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3333 546 Pfam Protein kinase domain 319 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3333 Gso-Chr11 49112324 49115986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3333 6 534 EF-hand Containing Proteins AT5G22840 70.489 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gso11g3333 Pkinase 8.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3333 K08832 - gmx:100809984 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1510 12 38489484 38493155 Gso11g3333 11 49112324 49115986 GST
Gso11g3333 11 49112324 49115986 Gso12g0682 12 6716391 6720765 PCT
Gso12g0682 12 6716391 6720765 Gso11g3333 11 49112324 49115986 PCT