Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3326 ATGGAACCTCCTGTCGTGAGATCCAGGGGCCGCCCACGCAAACGGAGGAGAGAAGACGAAGCAACCGTCACTGGTGACGCGAAAACGCTTCCCGAGGCAAAGAAGACGACGCCGGTTGCATTGATTGGACGATACGTGCTAAAAGAGTTTCGAAGAAACACGGTTCTTCTAGGCAAAGTCGCGCGTTATGTTAGTGGACTGTACAGAGTCGTATATGAGAGTGGCGGTTTCGAGGATTTAGATAGCAACGAGATTCGTAGGATACTTCTCCTTGATAGTTATTTCGACGACGATTTGATTCGGAGGAAGGTTGAATTGGAGGAATCGGTGTTGCCGAAGATCACAGCAGAGGAACCGGAGAAAGGTTCGAGCGAATTGCAAGGTGAATTATCGGTTGACAATGAAGAGGAACGAGCTGAGACGGATGATGATGAGGCCAGGGATTCGAGTTCCGGTGCGGAAATGCCGGAAAAGGCGATACCGTCGCCGCTGATGCTGCCGCCGTCTTCCGGAACAATTGGCGTGCCGGAACCGTGTGTTTTGAATCTCTTTTCGGTTTACGGATTTTTAAGATCGTTTAGCATTCGCCTGTTTCTTAGTCCGTTTACTTTGGACGAGTTTGTTGGTGCTTTGAACTGTAAAGTTTCGAATGCGTTGCTTGATGCAATTCACGTTTCGCTGATGCGTGTTTTGAAACGTCACCTTGAAAACATTTCACCAGATGGCTCGCGGCCTGCAACAAAATGCCTTAGGTGCAGTGATTGGAGTTTGGTTGATGCTTTGACTTGGCCTGTTTTTGTGTTTCAGTATTTAGCAATTTTTGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGACGAAATCTTTTATGGCGAGTATTATTTATTGCCTGCAAGTAGGAAATTGACGATATTGCAAATTCTCTGTGATGAAGTTTTGGCGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATCATGATAATGAAGATTGCCTTCCTGCTGAAAATGGGCCTAGAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATGCTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGAGGAGGATGATGTTGATGGCAATGGAGATGAATGTCGCTTGTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCAGAAGGGGCATGGTATTGTCCGGAGTGCAAAATAGATATGATTGGGCCTACTATTGCACGGGGAACATCACTTAAAGGGGCTGAAGTATTCGGAAAGGATTTGTATGGGCAAGTTTTCATGAGTACTTGCAACCACTTACTGGTGCTCAATGTCAACAGTGATGGCTTTTGTCTTAAATACTACAATCAGAATGACATACCTAGAGTTCTCCAAGTCCTTTATGCATCTGAGCAACATAGACCTATATACAATGGTATTTGCATGGCGATGTTAGAATATTGGAATATTTCAGAAAAGTTCTTACCCATTTGTGTCAGTAGACTAACTCCTATGGTCGAAGAAGAGCATAAAGCTGTTAGTTCGGTGAAGGAAGAATACAGTTTAATGTTTGGGAATGGGATTTGTGGTGATAATTTGGTGCCATCTCTTGATGCTTCATTGGTTACAACTCGAAGTCCTGCTCCTGGAAGCAGTGGCAATGCAAGAACTACTGTGAATCTGAAGCTTAATGAGGAAACTGCAATGGATTCGACTGTTTCAACTGTTAACCATCATCACTCTGACCCAAAGTGCCAAAATTCTGTTAATAGGTCAGCTGCAGTAAGCCCTGTCAAGTGCTCCTTGGTAAGCAGACAATTTAATAATTATGGGCACGCAAATGACGTAGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGCGACCAATCTGGTTTTGGAAAGTGCAAAGGCAGTTTAACTAATGATTTTGTGTACATGGGTTGCTCCTATAAACCACAGTCATATATTAATTACTATATGCATGGTGATGTTGCTGCGTCTGCTGCTGCTAACCTGGCTGTTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCTGGCAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTAGCAAAAGCATTCTCCCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCATTTCTTGCAAAGCCTCTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATAAGTGCCACCAAAAGTGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATCATCCCTAGCATTGCAACATATGTTATGTATATGGAGGAAAGTTTACGTGGCTTAATAGTTGGACCCTTTCTGAGTGAATGTTATAGAAAGCATTGGCGTAAACAAGTTGAACGAGCCAAATCATTTAGTGATATAAAGCCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGAGACTGGGTGAAGTTGATGGATGATTGGTTGGCTGAATTTTCTACAATGCAAAGTGCTACATGTACTCTTGGAACAACACAAAAACGTGCAACTTGTGGGAAGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGTTGGTGGTTGTCAGGAAAATTTTGCATGGTGGCATGGTGGGAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTAAAAAAAGGAGCCCGCCAAGGTGGTTTGAGGAAAATTTCGGGTATATTCTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGGCAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCTCAGCTGGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCTGGATGTGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGGAATGCAAATATTCGTGATAAAAAATTTGCAGAGGGAAAATTTTTGTACAGAGTAGCCTTTGGAATCCAGAAACATCTTCCTTCTCGGGTAATGAAAAATGCTGAAATAGAGCAAGGTCCCGAAGGAATGGAAAAATATTGGTTTTCTGAAACACGCATTCCTTTATATTTGTTAAAAGAGTATGAAGTACGTAATGGAAAAGTGCTATCTGAGAAAGAGTACATGCATATTACATCTCATATGCACAAAAGGCGGTTGACAGCTACCTACAAGGACATATTTTTTTACCTTACCTGCAAGAGAGACAAGTTGGACATGTTATCATGCTCTGTATGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCTTGTGAAGGTTATTGTCACATGGGGTGTTCCGTGAGTTCGACAGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAACAGTCCTGTTATGAATCTCCAACTAGTCCCTTACTTTTACAAGGACAAGAACGTAGCACTTCGGCAGTTCTGAAGGGGCCAAGGCCTAATGGTGATGGTCAAGGATTGATGTCTGCTAAGACAAAGAATAGTCGACTTGACATGAAACGAGTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGTAGCAGAAGTTGCTCTTGGGGTATTATATGGAAAAAGAAGAATAATGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAGGAAGGTTCAGGCCTGCCTCAACTGGATCCTGTTTGTCGTTTGTGCCATAAACCATATAGATCTGATCTAATGTATATTTGCTGTGAAACATGCAAACATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAACTTTTTGACGTGCTGGGCTTCAAATGTTGCAAGTGCCGCAGGATAAAGTCGCCTGTGTGTCCTTACTCTGATTTGTACATGATGCAAGGGGGCAAGAAGTTGCTCACAAGGGCTTCAAAGAAAGAGCACTTTGGGGCATATTCTGATTCCGGTACACCTATCGACACGAGAACATGTGAGCCTGCAACTCTTATCTATCCTACAGGGGATGTCTCTAGACAAGACAATGATCCTCTGTTTTTCTCCCTTTCAAGTGTTGAGCTGATTACAGAACTCCAGTTAGATGCAGATGATGCAGGTAATACTGTCTCTGGTCCAGGGCTTCCGAAATTACCTAAATGGGAGGGGGAGAATAATGGTTCTTTTATAGGTAATCTTCATGCTGAGTTTTCAACAAGCAATGCAATGGTGTCCAAATCTGTAAAAGATTTATCACCTGTAGAATATGGCTCTGCTGACTGCAATCTTCTGAATAACTCTGAAATTGTAAATTTTGATGAATTGGTGGATTTTGAACCTAATACCTACTTCTCTCTGACTGAACTGCTCCACTCAGATGATAATAGTCAATTTGAGGAAGCCAATGCATCTGGGGACTTCTCAGGGTATTTGAAAAATTCTTGTACATTAGGTGTTCCTGAAGAATGTGGGACTGTTAATTTAGCATCCAACTGTGGATCTACAAATTCGTTACAAGGAAATGTTAATAAATGTCGGCAATGTTCACAAAAGGAACCGGCCCCTGATCTCTCTTGTCAGATTTGTGGGATTTGGATTCACAGCCATTGTTCACCTTGGGTTGAATCACCATCTCGGCTTGGTAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4827 0.4232 MEPPVVRSRGRPRKRRREDEATVTGDAKTLPEAKKTTPVALIGRYVLKEFRRNTVLLGKVARYVSGLYRVVYESGGFEDLDSNEIRRILLLDSYFDDDLIRRKVELEESVLPKITAEEPEKGSSELQGELSVDNEEERAETDDDEARDSSSGAEMPEKAIPSPLMLPPSSGTIGVPEPCVLNLFSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNALLDAIHVSLMRVLKRHLENISPDGSRPATKCLRCSDWSLVDALTWPVFVFQYLAIFGYTKGPEWKGFYDEIFYGEYYLLPASRKLTILQILCDEVLASEELKAEMNMREESEVGIDHDNEDCLPAENGPRRVHPRYSKTTACKDAETKKYVSELNAEEDDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPEGAWYCPECKIDMIGPTIARGTSLKGAEVFGKDLYGQVFMSTCNHLLVLNVNSDGFCLKYYNQNDIPRVLQVLYASEQHRPIYNGICMAMLEYWNISEKFLPICVSRLTPMVEEEHKAVSSVKEEYSLMFGNGICGDNLVPSLDASLVTTRSPAPGSSGNARTTVNLKLNEETAMDSTVSTVNHHHSDPKCQNSVNRSAAVSPVKCSLVSRQFNNYGHANDVGLPMNLSLQTKGDQSGFGKCKGSLTNDFVYMGCSYKPQSYINYYMHGDVAASAAANLAVLSSEDSRSEGHVSGNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCISCKASVSSKKGCMLNHAAISATKSAMKILSGLAPVRSGEGIIPSIATYVMYMEESLRGLIVGPFLSECYRKHWRKQVERAKSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTMQSATCTLGTTQKRATCGKRKKQLSINKVTVGGCQENFAWWHGGKFTKSVFQKAVLPKSMVKKGARQGGLRKISGIFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHIRWSDLIRPEHNLLDVKGQDTEASAFRNANIRDKKFAEGKFLYRVAFGIQKHLPSRVMKNAEIEQGPEGMEKYWFSETRIPLYLLKEYEVRNGKVLSEKEYMHITSHMHKRRLTATYKDIFFYLTCKRDKLDMLSCSVCQLGVLIGNALKCSACEGYCHMGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKQSCYESPTSPLLLQGQERSTSAVLKGPRPNGDGQGLMSAKTKNSRLDMKRVASDFPLETKGRSRSCSWGIIWKKKNNEDTGFDFRLKNILLKEGSGLPQLDPVCRLCHKPYRSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPYSDLYMMQGGKKLLTRASKKEHFGAYSDSGTPIDTRTCEPATLIYPTGDVSRQDNDPLFFSLSSVELITELQLDADDAGNTVSGPGLPKLPKWEGENNGSFIGNLHAEFSTSNAMVSKSVKDLSPVEYGSADCNLLNNSEIVNFDELVDFEPNTYFSLTELLHSDDNSQFEEANASGDFSGYLKNSCTLGVPEECGTVNLASNCGSTNSLQGNVNKCRQCSQKEPAPDLSCQICGIWIHSHCSPWVESPSRLGSWRCGDCREWR* 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3326 1608 Pfam DDT domain 179 233 IPR018501 -
Gso11g3326 1608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 465 IPR013083 -
Gso11g3326 1608 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1605 - -
Gso11g3326 1608 SUPERFAMILY FYVE/PHD zinc finger 1283 1342 IPR011011 -
Gso11g3326 1608 PANTHER PHD FINGER FAMILY PROTEIN 1 1605 - -
Gso11g3326 1608 MobiDBLite consensus disorder prediction 115 163 - -
Gso11g3326 1608 SUPERFAMILY FYVE/PHD zinc finger 1555 1605 IPR011011 -
Gso11g3326 1608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1284 1342 IPR013083 -
Gso11g3326 1608 Pfam PHD-finger 386 428 IPR019787 -
Gso11g3326 1608 CDD PHD_SF 1288 1335 - -
Gso11g3326 1608 MobiDBLite consensus disorder prediction 1 26 - -
Gso11g3326 1608 ProSiteProfiles DDT domain profile. 177 237 IPR018501 -
Gso11g3326 1608 SMART testlast3 177 237 IPR018501 -
Gso11g3326 1608 SMART PHD_3 1288 1336 IPR001965 -
Gso11g3326 1608 SMART PHD_3 1128 1177 IPR001965 -
Gso11g3326 1608 SMART PHD_3 385 428 IPR001965 -
Gso11g3326 1608 SMART PHD_3 1560 1605 IPR001965 -
Gso11g3326 1608 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 292 324 IPR028942 -
Gso11g3326 1608 SUPERFAMILY FYVE/PHD zinc finger 355 429 IPR011011 -
Gso11g3326 1608 ProSiteProfiles Zinc finger PHD-type profile. 383 430 IPR019787 -
Gso11g3326 1608 ProSitePatterns Zinc finger PHD-type signature. 386 427 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3326 Gso-Chr11 49052035 49059949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3326 267 558 EF-hand Containing Proteins AT5G22760 45.110 4.53e-74 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso11g3326 DDT 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3326 - - gmx:100794210 3254.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1518 12 38558192 38565923 Gso11g3326 11 49052035 49059949 GST
Gso11g3326 11 49052035 49059949 Gso12g0686 12 6767907 6776971 PCT
Gso12g0686 12 6767907 6776971 Gso11g3326 11 49052035 49059949 PCT