Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3325 ATGAATTTAGATTTTCCTTCTTCCTATCTTTTTTCCAAACCCTTGGCGCGAAATCAGGAACTTAGGGTTAGGGTTCCGATGGGGAGCAAGGTGAGCGACCACCACTTATCCACCGTCCGATCCATCGTGGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTCCACATGGCCAAAAACGACGTCACTGCGGCCATCAACATCATCTTCGACACTCACACTGCCCCCAAATTCAAGCCCACGCGCCCCACCAATCCCCGACCAGTTTCTCCTCCAAAATCGACCCCTCCCACTCCCACTGTCAACGCCAACTCAAACTACAGCGTCGGTGAACGACACAGCGATGATAACCGCGACGATTGGTGGCTCGTGAGTTGTAGTGAAATGACATGTTTGTCCACGTGTAAAGGGAGGACTATAAGTTCCGGCGAGACCGTGGTTTTCAAGTTTCCGGCGAAGAAGCTCTCCGCTTCGCCCTCTCCGGGGAAGGCGTTCGGGCGGGCAGCGACTTGTTCGGAGATAGTTCGATTCTCCACGGAACAAGCTGGGGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATATGCGCCTAAAGTTTTGGGAATCATGGACTCCATTGTTTTGTCAGTGAGTGTATTTATCAATAGTTCGATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCCACTGATGAATCGGTGTTTCATCCACTTACAAATTTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAGAAGGCGGAGTTAACTCCTAGTGATTTCTATTCCAACAAACGTCCTCTCACTCAAAGGGTCACATTACCATGTTCCAAGTCTGAGCATCCTTCTCAAAATGGTCACGAGAGTGACAATGAGGATTCCATTTCTGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCGAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGTAATCTTATGTGTGAACTGCGGCCCTATCAAAAGCAGGCGCTTTATTGGATGATCCAGATGGAGAAGGGACAATCTATGGACGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCGTTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGGATCAATAGGCAGTCAACCCATAACCCAATCCTTTATTGAAAGTGGTGAAGTTAGTGATACAGTGCACAAATTTTCAAACATACCCAAGAAGGCAACCAAATTTGCTGGTTTTGATAAACCGATGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGCACACCCTGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCGCCGAAAATGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTTTTGCAGCTGCTGCTCTAATTTCTGACAGACGTTGGTGTCTAACAGGCACTCCGATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAAAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCAATCCTAGTTCTCCCTCCAGCTGATACGCAGGTAATTTACTGTGAACCCACAGAAGCTGAAAAGGACTTCTATGGAGCCCTATTCAAAAGATCTAAGGTAAAATTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAACAAACTAGCCAAGCGCTTCCTTAGAGGAACCTATACTGCTTCAGAAGGTGAAGTAAAAGATACACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTATGTAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGTATTTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGGAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCTTGCAAGGTAACTGTTCTTTTGAATGAACTTGAAAATCTTCGCTCATCTGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCCGAAGACAGCAACACCCTGGTGCTGTTAATGTCACTAAAAGCTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGGAATTGAAGATGCTTTTTACTTAG 3090 0.4508 MNLDFPSSYLFSKPLARNQELRVRVPMGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTAPKFKPTRPTNPRPVSPPKSTPPTPTVNANSNYSVGERHSDDNRDDWWLVSCSEMTCLSTCKGRTISSGETVVFKFPAKKLSASPSPGKAFGRAATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGQCKYAPKVLGIMDSIVLSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLTNLFRLLGLNPFKKAELTPSDFYSNKRPLTQRVTLPCSKSEHPSQNGHESDNEDSISEIDVENIVGVGSSSELEEMDPPGNLMCELRPYQKQALYWMIQMEKGQSMDETATTLHPCWEAYHLADKRELVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGGSIGSQPITQSFIESGEVSDTVHKFSNIPKKATKFAGFDKPMKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSLYVHYGQSRPKDAKSLAENDVVITTYGILASEFSSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISFAAAALISDRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADTQVIYCEPTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYTASEGEVKDTPSRAYVQEVVEELCKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNATSGLCPVCRKTISRLDLITAPTENRFQVDIEKNWVESCKVTVLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNLQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3325 1029 Gene3D - 676 1029 IPR027417 -
Gso11g3325 1029 MobiDBLite consensus disorder prediction 297 318 - -
Gso11g3325 1029 CDD RING-HC 794 833 - -
Gso11g3325 1029 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 864 1029 IPR001650 -
Gso11g3325 1029 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 622 IPR014001 -
Gso11g3325 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 660 IPR027417 -
Gso11g3325 1029 SMART helicmild6 893 976 IPR001650 -
Gso11g3325 1029 SMART HIRAN_2 125 233 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gso11g3325 1029 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 129 1029 - -
Gso11g3325 1029 Pfam Zinc finger, C3HC4 type (RING finger) 791 839 - -
Gso11g3325 1029 ProSitePatterns Zinc finger RING-type signature. 809 818 IPR017907 -
Gso11g3325 1029 SUPERFAMILY RING/U-box 782 840 - -
Gso11g3325 1029 MobiDBLite consensus disorder prediction 82 99 - -
Gso11g3325 1029 CDD SF2_C_SNF 860 987 - -
Gso11g3325 1029 MobiDBLite consensus disorder prediction 76 115 - -
Gso11g3325 1029 Pfam HIRAN domain 129 229 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gso11g3325 1029 SMART ultradead3 343 644 IPR014001 -
Gso11g3325 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 672 1018 IPR027417 -
Gso11g3325 1029 Pfam SNF2-related domain 350 738 IPR000330 GO:0005524|GO:0140658
Gso11g3325 1029 Pfam Helicase conserved C-terminal domain 864 976 IPR001650 -
Gso11g3325 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 858 IPR013083 -
Gso11g3325 1029 SMART ring_2 794 833 IPR001841 -
Gso11g3325 1029 ProSiteProfiles Zinc finger RING-type profile. 794 834 IPR001841 -
Gso11g3325 1029 PANTHER DNA REPAIR PROTEIN RAD5 129 1029 - -
Gso11g3325 1029 Gene3D - 404 672 IPR038718 -
Gso11g3325 1029 CDD DEXDc_SHPRH-like 347 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3325 Gso-Chr11 49038024 49046541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3325 27 1029 RAD5 or RAD16-like Gene Family AT5G22750 70.805 0.0 1486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g3325 SNF2_N 3.7e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3325 K15505 - gmx:100794558 2046.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1519 12 38581607 38591206 Gso11g3325 11 49038024 49046541 GST