Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3321 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGAGAGTCTGTTAAGGTAGACCCAGCCGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGATAAGCCTGAACCGGTGGTTCTCTACATGAAAGTTGGTGAACAGAAATTTGTCTTGGGAACCCTTTCCAGGGAGAAAATCCCTCAAATATCTCTGGAATTGGTTTTGGAAAAGGAGTTTGAGCTTTCCCACAGTTCAAAGAGTGCCAGTGTTCATTTCTGTGGATACAAGGCATATTACGATGCCGATAATAGTGACGAGGATGAATTTACTGATAGCGATGAGGATGATGAGGATGTTCCATTGATTAACACAGAGAATGGAAAACCTGAAACAAAAGCTGAAGACTTGAAGGTACCTGAATCTAAAAAAGCTGTTGCCAAGGCTAGTGGATCAGCAAAACAAGTCAAGGTTGTTGAACCAAAAAAAGATAACGAGGAGGACTCTGATGATGATTCTGATGATGATGATTTTGGATCTTCTGATGAAGAGATGGAGGATGCTGATAGTGACAGTGATGATGAGAGTGGTGATGAAGATGATGATGAAGAGACCCCTCCCAAGAAGGTGGATCTGGGAAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTTCTTCCAAGAAAGCCAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAGGTGGACATACAGCAACTCCTCACCCTGCAAAGAAAGGCGGAAAGACTCCCAACAGCGAAGCCAAAGCCAAGACTCCCAACAGTGAAGCCAAAGCCAAGACTCCTAAGTCTGGTGGACTCTCTTGCAAAACCTGCAGCAAGTCTTTCACCAATGAAAGTGGTCTGCAACAACATAACAAGGCAAAGCATGGTGGTCAGTGA 921 0.4419 MEFWGAEVKVGESVKVDPAEFEACIHLSQAALGEAKKDKPEPVVLYMKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYDADNSDEDEFTDSDEDDEDVPLINTENGKPETKAEDLKVPESKKAVAKASGSAKQVKVVEPKKDNEEDSDDDSDDDDFGSSDEEMEDADSDSDDESGDEDDDEETPPKKVDLGKKRPNESASKTPVSSKKAKNATPEKTDGKKGGHTATPHPAKKGGKTPNSEAKAKTPNSEAKAKTPKSGGLSCKTCSKSFTNESGLQQHNKAKHGGQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3321 306 MobiDBLite consensus disorder prediction 260 300 - -
Gso11g3321 306 MobiDBLite consensus disorder prediction 230 244 - -
Gso11g3321 306 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 302 - -
Gso11g3321 306 MobiDBLite consensus disorder prediction 162 202 - -
Gso11g3321 306 Gene3D Nucleoplasmin core domain 1 101 - -
Gso11g3321 306 SMART c2h2final6 280 303 IPR013087 -
Gso11g3321 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 306 IPR013087 -
Gso11g3321 306 MobiDBLite consensus disorder prediction 101 306 - -
Gso11g3321 306 MobiDBLite consensus disorder prediction 102 118 - -
Gso11g3321 306 MobiDBLite consensus disorder prediction 126 140 - -
Gso11g3321 306 SUPERFAMILY beta-beta-alpha zinc fingers 268 302 IPR036236 -
Gso11g3321 306 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 302 - -
Gso11g3321 306 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Gso11g3321 306 ProSitePatterns Zinc finger C2H2 type domain signature. 282 303 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3321 Gso-Chr11 48990333 48993435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3321 1 303 C2H2 Transcription Factor Family AT5G03740 37.695 8.45e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3321 NPL 8.2e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3321 - - gmx:100792094 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1523 12 38645720 38648999 Gso11g3321 11 48990333 48993435 GST
Gso11g3321 11 48990333 48993435 Gso12g0691 12 6871939 6875298 PCT
Gso11g3321 11 48990333 48993435 Gso11g1427 11 16443726 16446721 PCT
Gso12g0691 12 6871939 6875298 Gso11g3321 11 48990333 48993435 PCT
Gso11g1427 11 16443726 16446721 Gso11g3321 11 48990333 48993435 PCT