Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3297 ATGAGTTTTAGGGAGTGCAATAATGTAGAAAACAAGAATCTATGTCTTCAAACCCCAACTTTTATTGAGTGGCTCAAACCATCATCATCTTCCTCTCAAACTAGTTCAATTTCATCATCACCTCCTTCTTATTCCTTGATTCAGCATGAACAACTTGTACAAGATCAAACGATCCAGTTTTTGCCCTTTAAGGAAGATCAACATATTGGAGTGCAAAAGGAAGGTTTAGAAGTAAAAGAAGAGAAGAAGGTGGAACAGGTGACGGTGGCTTTGCACATTGGATTGCCTAACACGAGAGGCCATGAACCTGATGATGATCATGATGCTGATGAAAAAAAGCTTTTCCATGTTAAGGAAGAAGAAGAACCCTTGAAGAAAAGCTTCCAGGGCAATTGCTCTTTCAACCAGGAGAGAAGATTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGAGCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTTAGGAAAGGACCAGAGTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCACCCAAGAGCAAAGCCCTTGAAGGATTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCACGGTGCAAAACCATTTATGTGCCGAAAGTGTTCGAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGAAAGTTGTGGTACTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCTCCACATCCTTCTCTTGAAGGCTTCGTCGAGGATGAGAAGGAATGTGTTACAGGTTCTGATGATGAAGATGATGTTGCTCATGCATGA 960 0.4219 MSFRECNNVENKNLCLQTPTFIEWLKPSSSSSQTSSISSSPPSYSLIQHEQLVQDQTIQFLPFKEDQHIGVQKEGLEVKEEKKVEQVTVALHIGLPNTRGHEPDDDHDADEKKLFHVKEEEEPLKKSFQGNCSFNQERRFWIPTPAQILVGPMQFACSICSKSFNRYNNMQMHMWGHGSEFRKGPESLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDDEDDVAHA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3297 319 Pfam Zinc finger, C2H2 type 155 174 IPR013087 -
Gso11g3297 319 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Gso11g3297 319 SMART c2h2final6 155 177 IPR013087 -
Gso11g3297 319 SMART c2h2final6 239 259 IPR013087 -
Gso11g3297 319 SMART c2h2final6 202 234 IPR013087 -
Gso11g3297 319 Gene3D Classic Zinc Finger 197 288 - -
Gso11g3297 319 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 316 - -
Gso11g3297 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Gso11g3297 319 SUPERFAMILY beta-beta-alpha zinc fingers 225 259 IPR036236 -
Gso11g3297 319 SUPERFAMILY beta-beta-alpha zinc fingers 141 178 IPR036236 -
Gso11g3297 319 PANTHER ZINC FINGER PROTEIN WIP2 1 316 IPR043584 GO:0003700|GO:0010468
Gso11g3297 319 Gene3D Classic Zinc Finger 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3297 Gso-Chr11 48778062 48781894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3297 7 308 C2H2 Transcription Factor Family AT1G08290 57.647 3.47e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3297 zf-C2H2_6 8.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3297 - - gmx:100800644 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1548 12 38946113 38950268 Gso11g3297 11 48778062 48781894 GST
Gso11g3297 11 48778062 48781894 Gso12g0718 12 7234875 7238676 PCT
Gso11g3297 11 48778062 48781894 Gso11g1391 11 15944795 15948581 PCT
Gso12g0718 12 7234875 7238676 Gso11g3297 11 48778062 48781894 PCT
Gso11g1391 11 15944795 15948581 Gso11g3297 11 48778062 48781894 PCT