Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3295 ATGTCTCTCCAACAACCAAATCAAGAGGTGCCATTGCAAGAACCAGAAGCCGCATTTTCTCAACTGAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCTATTGCAAGAATGGGAAGAGCTTAGGTTCCATGAACATGGATGAATTCCTTTCCAGCATTTGGAACTCAGATGATAACAACCAAGTTAACCCACCACTACCAACCCTTGATGAAGCTGCGAAGGGTAAAAGTGTAATAGCAACAGAACCCACCACAATTTCCCAGCCAGGCTCATTATCTGTCCCTCCTCCAATTTGCAAGAAAACAGTGGATGAAGTTTGGTCTCAGATCCACAAAAGCCAACCAGACCACAATGATGCTAACAATAGCCTTGCAAGGAATGAGCCACTACTCAAAAGGCAACAAACACTTGGGGAAATGACTTTAGAGGATTTCCTAGTAAAAGCTGGGGTGGTACAAGAATCATCATCACTATTCCAGTCTTCATTGTTACCTCAGAATCAGATTGGTAACATTGCAAGTAATGGACCATTGGGTGCAGGTTATAGGTTGAGGCCTGTAATAGGGACAGGATCTAGTGTGTCTTGTAATGGACTTGAAACACAAAACATGTTGGCACAGAATAACAACTTAGTTGTAAAGGATCTCACTACAAATGGTGCTGTGGAGAAATGTCCAAGCTTGGGAGAATCAAATGGGAAGGGTAATAGGAAGAGGATCATTGATGGTCCTCCTGAAGTGGTAGTAGAGAGAAGGCAGCGCAGAATGTTGAAGAATCGAGAATCAGCTGCACGTTCTCGAGCACGAAGACAGGCATATACGGTGGAACTAGAAGCAGAGTTGAATCTGCTAAAGGAAGAGAACGAAAAGCTCAAACAAACTCTGGCTGAAGCTGAACGCAAGAGAAAACAAGAGATTTCTCAGAGAAAGCACACAACAATGGCTCAAAAGAGGACAGAAAATTTGAGGGCAATGAGGAGGCCTCTAAGCGCATCCTGGTGA 1011 0.4362 MSLQQPNQEVPLQEPEAAFSQLSKQNSILSLTLDEFYCKNGKSLGSMNMDEFLSSIWNSDDNNQVNPPLPTLDEAAKGKSVIATEPTTISQPGSLSVPPPICKKTVDEVWSQIHKSQPDHNDANNSLARNEPLLKRQQTLGEMTLEDFLVKAGVVQESSSLFQSSLLPQNQIGNIASNGPLGAGYRLRPVIGTGSSVSCNGLETQNMLAQNNNLVVKDLTTNGAVEKCPSLGESNGKGNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNLLKEENEKLKQTLAEAERKRKQEISQRKHTTMAQKRTENLRAMRRPLSASW* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3295 336 Coils Coil 273 311 - -
Gso11g3295 336 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Gso11g3295 336 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 304 IPR004827 GO:0003700|GO:0006355
Gso11g3295 336 PANTHER BZIP TRANSCRIPTION FACTOR 2 336 - -
Gso11g3295 336 Pfam bZIP transcription factor 254 306 IPR004827 GO:0003700|GO:0006355
Gso11g3295 336 SUPERFAMILY Leucine zipper domain 254 303 IPR046347 GO:0003700|GO:0006355
Gso11g3295 336 MobiDBLite consensus disorder prediction 299 322 - -
Gso11g3295 336 MobiDBLite consensus disorder prediction 227 246 - -
Gso11g3295 336 Gene3D - 252 308 - -
Gso11g3295 336 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 336 IPR043452 GO:0003700|GO:0045893
Gso11g3295 336 SMART brlzneu 250 314 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3295 Gso-Chr11 48753331 48755631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3295 5 336 bZIP Transcription Factor Family AT3G44460 43.440 3.08e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g3295 bZIP_1 2.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3295 K14432 - gmx:100799576 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1553 12 39000912 39003228 Gso11g3295 11 48753331 48755631 GST