Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3294 ATGGCGAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCAAGACCTTCAACTCACCACATCCCTTATGGAGTGCTTCAAGGAATTAACACTCCTGCGTCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGAGTAGAAATGATGAGGGCAAAACATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGTAAGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCTAGCAAAACTGAGCCCCCCTTTGAGGCAGAATCTCCCATAAGCAAAAAGGCATCTTCTTCAGATCATCATCATCAGTCTTTTGATCAGCAGCATCTGCAGCACAGACAGCAACTTCAACAGGAGATGGCAAGTGATGCCCCAAGATCAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGAAAGGGAGATGGTTCTACTTCAGAGAAACCACTTGATGCAAAGGCATTGAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAGTCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTTCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTATGGAGGTGTTGGAAGTACTGTAAGCTCTGCAGGAGCCGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAAGATCACAGGCTAATGGGGGAGCTGAGGAACGGGTTGCAAGCACCGTTATCAGATAGTGATATGAGAGTGATGGTGGATGGATATCTTTCTCACTATGATGAAATTTTCAGGCTCAAGGTTGTGGCTGCTAAATCAGATGTGTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGTTGATTCAACAGTTGGAGCCACTAGCTGAGCAACAAATAATGGGGATGTATGGCTTGAGGCATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAGCAGTTGCAACAGTCTCTTGTGGACACCATAGCTGGAGGCCCAGTTGTTGATGGTGTTCAACAAATGGTCCTTGCCATGAGCAAGCTTGCCAATCTTGAAGGATTTGTTCGCCAGGCTGATAATTTGAGGCAGCAAACTCTTCATCAGCTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGCTTCATTGTTATTGGAGAGTACTATGGACGTCTTCGTGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAGCGACGATAACTCATGTCAAACAACTACGGAAATGCAAATAGTCCAACATTCTCAGAATTATTTCTCAAGTTTCTGA 1473 0.4549 MASHRIGELGLSESRPSTHHIPYGVLQGINTPASSLINQGSAFDFGELEEAIVLHGVKSRNDEGKTSLFTARPAATLEMFPSWPMRFQQTPRVSGSKSGGESTDSGLSSKTEPPFEAESPISKKASSSDHHHQSFDQQHLQHRQQLQQEMASDAPRSASSQNQSAAKSPQEKRKGDGSTSEKPLDAKALRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDYGGVGSTVSSAGAAMFDMEYARWLEEDHRLMGELRNGLQAPLSDSDMRVMVDGYLSHYDEIFRLKVVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVLAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLISDDNSCQTTTEMQIVQHSQNYFSSF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3294 490 PANTHER TRANSCRIPTION FACTOR TGA9 64 469 - -
Gso11g3294 490 PANTHER TRANSCRIPTION FACTOR TGA9 64 469 - -
Gso11g3294 490 SUPERFAMILY Leucine zipper domain 187 230 IPR046347 GO:0003700|GO:0006355
Gso11g3294 490 Pfam Seed dormancy control 269 343 IPR025422 GO:0006351|GO:0043565
Gso11g3294 490 MobiDBLite consensus disorder prediction 169 188 - -
Gso11g3294 490 MobiDBLite consensus disorder prediction 87 112 - -
Gso11g3294 490 CDD bZIP_HBP1b-like 187 237 - -
Gso11g3294 490 ProSiteProfiles DOG1 domain profile. 251 459 IPR025422 GO:0006351|GO:0043565
Gso11g3294 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 229 IPR004827 GO:0003700|GO:0006355
Gso11g3294 490 Pfam bZIP transcription factor 186 222 IPR004827 GO:0003700|GO:0006355
Gso11g3294 490 Coils Coil 206 233 - -
Gso11g3294 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Gso11g3294 490 MobiDBLite consensus disorder prediction 139 168 - -
Gso11g3294 490 MobiDBLite consensus disorder prediction 80 188 - -
Gso11g3294 490 Gene3D - 186 235 - -
Gso11g3294 490 SMART brlzneu 183 248 IPR004827 GO:0003700|GO:0006355
Gso11g3294 490 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3294 Gso-Chr11 48743841 48751788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3294 158 490 bZIP Transcription Factor Family AT1G08320 70.571 1.97e-175 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g3294 DOG1 2.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3294 K14431 - gmx:778123 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1554 12 39016202 39024646 Gso11g3294 11 48743841 48751788 GST
Gso11g3294 11 48743841 48751788 Gso12g0721 12 7296750 7305286 PCT
Gso11g3294 11 48743841 48751788 Gso11g1389 11 15881396 15889681 PCT
Gso12g0721 12 7296750 7305286 Gso11g3294 11 48743841 48751788 PCT
Gso11g1389 11 15881396 15889681 Gso11g3294 11 48743841 48751788 PCT