Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3292 ATGTACCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAGCAGGAAATGGTTCTGGTGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCAAGGTTTATAGAAGCAGTCAACCAGTTAGGGGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTAATGGGAATTCCTGGGCTTACCTTGTATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATCACAACAAGTGCAACAACTGGGGAGAGACTTTCTGAAACCAATGGTACTCACATGAACAAATTAAGCCTTGGACCACAGGCTAACAAAGATTTGCATATAAGTGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAAACTCTTGGCAGACAAAATTTGGGAATAGTAGGACTTGAAGCTGCAAAAGTTCAACTTTCAGAGCTGGTATCCAAAGTCTCATCACAGTGCTTCAACTCAGCATTCACAGAGCTGAAGGATTTGCAAGGATTTTGCCCTCAGCAACCACAAACCAACCCGCCAAACGACTGCTCAATGGACAGTTGCATCACCTCCTGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGGCTTAAGACACTTCAGCAGCCATATGTTCATGGAGCAAAAGGAAGCCAAAGAAGCTCCCAACAACCTTAGGAACCCTGAAATCAAGTGGTATGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAAGAATGAAGAGAGAAGAAACTATGCTGCTGAATGCAGTCCTAGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGAAGCAGCATGTATCCCGAGAGACTAATCACAGAAAGCCCATCAGATGGTAGAATCAAGCCACAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGTTGCCAACTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACACTCATGGAGACAATGAAGTTTTGTAA 1203 0.4298 MYHHHQHQGKNIHSSSRMPIPSERHMFLQAGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTSATTGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCFNSAFTELKDLQGFCPQQPQTNPPNDCSMDSCITSCDRSQKEQEIQNGLRHFSSHMFMEQKEAKEAPNNLRNPEIKWYDDGKKNTFLAPLSKNEERRNYAAECSPSNLSMSIGLERETENGSSMYPERLITESPSDGRIKPQTMKPVDEKVSQDYRLPTSYFAAARLDLNTHGDNEVL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3292 400 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Gso11g3292 400 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Gso11g3292 400 MobiDBLite consensus disorder prediction 120 139 - -
Gso11g3292 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 398 IPR044848 GO:0003700
Gso11g3292 400 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Gso11g3292 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gso11g3292 400 Coils Coil 149 169 - -
Gso11g3292 400 MobiDBLite consensus disorder prediction 120 138 - -
Gso11g3292 400 PANTHER MYB-RELATED PROTEIN 2 4 398 - -
Gso11g3292 400 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Gso11g3292 400 Gene3D - 45 103 - -
Gso11g3292 400 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3292 Gso-Chr11 48724773 48728175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3292 78 336 G2-like Transcription Factor Family AT3G04030 57.795 5.44e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso11g3292 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3292 - - gmx:100799064 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1556 12 39044018 39047154 Gso11g3292 11 48724773 48728175 GST
Gso11g3292 11 48724773 48728175 Gso12g0725 12 7349098 7352139 PCT
Gso11g3292 11 48724773 48728175 Gso11g1387 11 15821256 15824904 PCT
Gso12g0725 12 7349098 7352139 Gso11g3292 11 48724773 48728175 PCT
Gso11g1387 11 15821256 15824904 Gso11g3292 11 48724773 48728175 PCT