Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3274 ATGATGGAAGGGGTTTCGAGGGAGGCTCAGATGTCGATTGCTGCTTCGTCCATGTTTCCTGGATTCAGATTCTGCCCTACCGATGAGGAGTTGATTTCTTATTACCTGAGGAAGAAGTTGGAGGGTCATGAGGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTTTGTAAATACGAGCCTTGGGATTTACCAGCCAAATCATTCATTCAGTCAGACAACGAATGGTTCTTCTTCTCTCCCCGCGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGAGCAACTGAATGTGGATACTGGAAGGCAACTGGCAAAGAGCGAAATGTAAAGTCAGGTTCCAACATTATAGGAACGAAGCGGACTTTGGTGTTCCACTTAGGGCGTGCACCTAAAGGGGAAAGGACTGAATGGATTATGCACGAGTACTGCATTAATGACAAATCTCAGGAATCTTTGGTCATTTGTCGCCTCAAGAGGAACACAGAGTTCCGTTTGAGCGATGCTTCGAATAGAGCTTCATCAAGTCAAAGGCATCCGGTGAATTCACATGAAAGTGGTTGTGCTATCTCAGGAGGTGGTATTGATCAAAGGGATGCTTGTGAGCAAGACAAAGAGGTTGGATGTAGCTCCAAGAGGGACAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGATTCTGTGTCCGAATCGAATCAGCGACCAGTTAACGAAGCTACTTTCACTGAATCTTCAGGTCAACCAAAGGAGGGGTATGAAGAGGATTGTTATGCAGAGATACTAAAGGATGATATCATCAAATTAGATGAATCATCAATCTTGGTAGAGAGTCACACAAGACCACAGGATCCTACACAGATGCAACCTGCACCACAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCATTCTCGTGCAGTAGTTCGTTTCCCAAGCACAATGCACTCATCAAAGAATACCTTCTTCGCCAGAACAACCAACAGTTTGGTGGTATTAGCTTTCTTCGTTTTCACTTTGATGGTTCTATATTTTTTGTCCTTAGTGAGAGGACAAAAACAAGACAAGTATTGTGGGGAATTTTCGGGTGTAAATCATGATTACCAGAAGTTTCTTAAACTTGATGATGACGGAATGCTGGGTCTTCAACTCTTGATTGATTCCAATCTTACATTACCTGGTGGTGGTGGGGGCTCAATCTTATTAGGAATCATGTCGAGGCCCATGTTGCTTGTTTTTTTGCTGATTATACTTATAATCACCTCACAGTTCGAGTGGAAGCAGCAGCTTGTGGCCGATGTTGACTCTAACCCCAACTTGCCTCAGAAGCAGCATCAGATTTCTAAGGCTGAAGAAACCGTTAAGGAGAAGATTATTTTAGTGCAAGAGAAGAATATTCGAAGGCTGAATGAGCTAGTGCGGCATCTCCAGGAACAACTGCAGCAGTGTAGAGGACGCAATGGAACAATAAATGGAACTGTAAGCCCTCTAGCTGAGCGGATTCTTGAGCTTGAGCGACAGCAAATTTTAGAGGATTAA 1551 0.4358 MMEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLEGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQESLVICRLKRNTEFRLSDASNRASSSQRHPVNSHESGCAISGGGIDQRDACEQDKEVGCSSKRDSSSYGSPSMEQIDSVSESNQRPVNEATFTESSGQPKEGYEEDCYAEILKDDIIKLDESSILVESHTRPQDPTQMQPAPQGTAQRRIRLRVGNSKHSRAVVRFPSTMHSSKNTFFARTTNSLVVLAFFVFTLMVLYFLSLVRGQKQDKYCGEFSGVNHDYQKFLKLDDDGMLGLQLLIDSNLTLPGGGGGSILLGIMSRPMLLVFLLIILIITSQFEWKQQLVADVDSNPNLPQKQHQISKAEETVKEKIILVQEKNIRRLNELVRHLQEQLQQCRGRNGTINGTVSPLAERILELERQQILED* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3274 516 MobiDBLite consensus disorder prediction 166 183 - -
Gso11g3274 516 Gene3D NAC domain 27 165 IPR036093 GO:0003677|GO:0006355
Gso11g3274 516 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Gso11g3274 516 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 12 361 - -
Gso11g3274 516 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 361 - -
Gso11g3274 516 MobiDBLite consensus disorder prediction 277 293 - -
Gso11g3274 516 MobiDBLite consensus disorder prediction 166 250 - -
Gso11g3274 516 MobiDBLite consensus disorder prediction 277 297 - -
Gso11g3274 516 Coils Coil 463 490 - -
Gso11g3274 516 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Gso11g3274 516 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Gso11g3274 516 MobiDBLite consensus disorder prediction 211 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3274 Gso-Chr11 48598345 48607490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3274 5 354 NAC Transcription Factor Family AT2G27300 43.169 8.32e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g3274 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3274 - - gsj:114373381 1006.13