Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3267 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGCCGCGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCCGAGAAGATGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTCAGCATCCTTACATTGTGGAATTTAAAGAGGCTTGGGTTGAGAAGGGTTGTTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAGAAATCAAACGGGATTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAAATACTCTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGTGATCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCATGATGTTCGCCTTGGTGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGTTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTGAAAACATTGATAAAGGGCATGCTGAGAAAAAATCCCGAGCATCGTCCAACAGCATCTGAAATCTTAAAGCACCCTTATTTGCTGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACTCCAACAGCTGGTTCTCCTGAAAAGCCAATTTCTGCTGTCCATCATGCTCTAAAAAATAAGCCAGGAAGTCAAAACAGAAGTAGTTCGAGTACCGAGAAAGATAGTTTGATGTCAAATGAGAAAAACAATGCAAAAGCATTGCACAAATGTGATTGCAAAATCACTGAAATAGACCTGACATCAATTGAGGATGACAGCTCTGAGCAACTCCTGCCTGGGGAAGAAGGAAATGGTTCCAGCAAAGTCAATGCCAAGACAAATGAGAAAGAGCTGACGAAGCACTCTAATAATGAACAGCATTCTAATGTTGTATCTAAGCAACCAAAAGCAATTAAGACTGTAGTGACAGCTTTAAAAGATGGAAAACTTAAAGAGACAAGTTCTCCAATAAGAAGCAATCGCATAAAGGTTGGTGGTGTGTTGACACATAAAATAAATACAGAGACAGTATCCAATTTGCCCAAACCCAATTTTGGTGCTTACGATTTGAAGCCTAATTTGGAGGTGCCAACTACTGCACCTTCTAAAACAACTCCTGATTCCGCAAAAAGAATGCAAGGGTCAAACACTTCAAAGCATCAGTTACCAATGATAGAATCCACACCAAAAACTAAACCTAGACATAATGTGATTCCACCTTCTGGTCCAGTCAAACAAGTAGATGGACGTGAAGTTCCTTCCAAGACAAGGCAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTGAGGCAGGCTGGGTTTGATGTTCTAAATGCAGCAAATAATACTGGAAAGACAAGTCCAAAGAAAATGGTTCGAGAGCCTAAGATGAGCCATCATCAGTTGACCAACAGTCATCTACCACATGTTTCTAGAGAGATTACTAGAGAGCCTTTGAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCGCTCTCTATTCAAGGATTTGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAACCAACACTTCCTGATCATGAGAATTTAAACCACACTGAAAACAAGGAATCACGTCCAGATAGCAGTTCACCTGCATCCTATTTGCATTTTGACATGTCTGAACAATTGTCTGGGGAAACCCCTGTGGTTACACCACGTTTTCAGAATATAACTTCTAGTAATGAGAAAGTAAGTCCCGGTTTAACTCTTGATCACTCAAGCCAAAATGCTGAGGTAATGCTTTCTTCTGATGATAGTTTTTCCATAAATCAAAGGACTTCATCTGCTGGCTCCAGGTGTGATGATAGATCAGTAGATCCCTCTGCTGAAATCACAGAAGAAGATATTTCAAAGGAAATGACTTCGACCAAGTCTCTCCAACAGCCGCTCCCCATTTTTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCAGCAAGCAAGCCAAATAATAGGTTTGATAAAGTTAGCCCGCCAAAACTCATGTGCATCTCAACTGGTGATGACCAATTCATGGTGAGGGGAAGACTGTCATCAGTGGATGAAACTGCTCCTTTGATTATTTCTACTAATATTTCAAGCCAGAAAGTTTTGCAAGAAGAGAAAGCAACAGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTGTTGGGCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGCGTGGGGAGTGAGCAGCCAGTGAAGGAATCTCTGGAGATGGGAGTTCAAAGTGTAGATGTTGGTAAGTTTATCAACATTGTAAGGGATGATTTAGAAATGAGAAATGTGAGCACTCCTTTGACTCTGAAATCTTCAAATTGCTCTGAAGCTATTGGCTTGAAGTCAAATATTTCTGATAATATGGAAATCAGAAACTTAAGTAATCCTCCTAACTTAAAATCTTCAAGTTGCACCGACTTGATGAACATCAAATCAAGTTTTTCTGATCATCCTGTTGTTAGGCAACAAGATGTGGAAAACACTGATTCTCTTGTTTCAAAATCTGATTCCTCCGAGTATACCAAACATAAGACTCCTACAGCTGCAGAGGGAACACCCCCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAAGCACTTGAAGGACTGCTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCCTTTGGAAAAGATAAAGTTTCCCCAAGGGAGACGGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATTGAGGAAAGTGGGGGACGCAGTTAA 3123 0.4124 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKMKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGIYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLLPYVDQYRSSFCTPTAGSPEKPISAVHHALKNKPGSQNRSSSSTEKDSLMSNEKNNAKALHKCDCKITEIDLTSIEDDSSEQLLPGEEGNGSSKVNAKTNEKELTKHSNNEQHSNVVSKQPKAIKTVVTALKDGKLKETSSPIRSNRIKVGGVLTHKINTETVSNLPKPNFGAYDLKPNLEVPTTAPSKTTPDSAKRMQGSNTSKHQLPMIESTPKTKPRHNVIPPSGPVKQVDGREVPSKTRQKTPPSLLKPPSFPGHVRQAGFDVLNAANNTGKTSPKKMVREPKMSHHQLTNSHLPHVSREITREPLKTFESSSKGMQTDSSNSVSSSLSIQGFELSDFATTFIDLSEPTLPDHENLNHTENKESRPDSSSPASYLHFDMSEQLSGETPVVTPRFQNITSSNEKVSPGLTLDHSSQNAEVMLSSDDSFSINQRTSSAGSRCDDRSVDPSAEITEEDISKEMTSTKSLQQPLPIFGEKSVCEEFGPASKPNNRFDKVSPPKLMCISTGDDQFMVRGRLSSVDETAPLIISTNISSQKVLQEEKATVLQNPAPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPVKESLEMGVQSVDVGKFINIVRDDLEMRNVSTPLTLKSSNCSEAIGLKSNISDNMEIRNLSNPPNLKSSSCTDLMNIKSSFSDHPVVRQQDVENTDSLVSKSDSSEYTKHKTPTAAEGTPPKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRS* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3267 1040 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3267 1040 MobiDBLite consensus disorder prediction 339 381 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 932 949 - -
Gso11g3267 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1024 - -
Gso11g3267 1040 SUPERFAMILY Protein kinase-like (PK-like) 4 299 IPR011009 -
Gso11g3267 1040 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3267 1040 MobiDBLite consensus disorder prediction 440 519 - -
Gso11g3267 1040 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gso11g3267 1040 CDD STKc_Nek 7 262 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 932 968 - -
Gso11g3267 1040 Gene3D Transferase(Phosphotransferase) domain 1 90 337 - -
Gso11g3267 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1024 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 445 473 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 617 631 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 694 713 - -
Gso11g3267 1040 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 292 315 - -
Gso11g3267 1040 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gso11g3267 1040 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3267 1040 MobiDBLite consensus disorder prediction 293 315 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 339 360 - -
Gso11g3267 1040 MobiDBLite consensus disorder prediction 614 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3267 Gso-Chr11 48495472 48502941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3267 14 262 MAP Kinase Kinase Kinase AT1G53570 33.465 1.09e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso11g3267 Pkinase 2.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3267 K08857 - gmx:100780141 2042.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1581 12 39299294 39307015 Gso11g3267 11 48495472 48502941 GST
Gso11g3267 11 48495472 48502941 Gso12g0766 12 7714350 7720952 PCT
Gso11g3267 11 48495472 48502941 Gso11g1346 11 15174279 15180993 PCT
Gso12g0766 12 7714350 7720952 Gso11g3267 11 48495472 48502941 PCT
Gso11g1346 11 15174279 15180993 Gso11g3267 11 48495472 48502941 PCT