Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3263 ATGGCGACGTACTTTAATGGAAGCACTTCGGAAATTCAACCTTCTGCAGATGGCGGCTTGCAAACGCTTTACCTTATGAACCCAACTTACGTACCCTACGCTGACGCGCCGCACCACCCAACAACGCTCCTCGTCAATCCCAACGCACCCAACCTCGCGAATATCCCACACGCGCCGCCAGTGTCACCAAACCAACAACATCACCACGTGATTCACGGCGTCACAAGCATCATCGGATCCGGCAATTCCGATGACCACTCCCGACCGTCGTTGATCGGCGAAAACATCGCCGCCTTCCACGGCTTCTCCGGCGGGGCAGGCACTGCCTCCACCGCCGCCCCTCGCCTTCACTATAACCTCTGGGGTCCGGTGGTTGATCAGCCGGGAACGCCGTCTAGCAGCTCCGGTGGAGGCGGTTTCCGGCGGCCGAGTCAGCAGGGTTTGTCTCTCAGTCTTTCATCACAGCAAACAAATTTTAGATCAGTTTCCGGCGAGCTTGACGTGGCCGGACAGGGCCACGTTGCCGGAATTGGGAACTCGCCGATGTCGGCGTCGATCGGAGTTTCAGGTGTTATTATGGGGTCAAAGTACTTGAAAGCTGCACAGGAGCTTCTGGATGAAGTTGTGAACGTGGGAAAAGGAATCTACAAAGAGGAGAAATTCTCAGAGAAGGTGAAAGCGAATAGGGAATCAACTAATTCTGGTGCTGCTGGTGATGGTGGAGATGGTTCAAGTGGTGGAGGAGAAAACAGTGCAGGGAAACAAGTGGTTGAACTCAGCACCGCTCAGAGGCAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTGACCATGCTCGATGAGGTAGAACAAAGGTACAGACAATATCACCACCAAATGCAAATTGTGGTATCGTCATTTGAGCAGGCAGCAGGTTATGGGGCGGCAAAATCTTACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCAGGTGCCTTAAAGATGCAATCTCTGCACAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGTTTAGGAGTTAAAGTAGAAGGGTCGAGGCTTAGGTTTGTTGACCACCATCTCAGGCAACAAAGGGCACTTCAGCAGCTAGGAATGATTCAACCCAATGCATGGAGGCCCCAAAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCTTATCCAAAGGACTCCGATAAAGTTATGCTTGCTAAACAAACTGGACTTGCTAGGAGCCAGGTGTCAAACTGGTTTATCAATGCCCGAGTTCGGCTTTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATCAAGGAGCATGAACAAGGTAATGGCTCAGAAAACACCAAATCAAAAGAATCGAGCAAGGAGTTGGCTTCAACAGCAAATGTTGCACTCGATCATCTCCAATCAAAACAAGAAAGCTTCAACAACCAAAACACTTCCCCAACCGAGATCTCAACAAGCTCTTCAATGTCTCCAATGGGAGGGTCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATCATCTGACATGCAAATTAGGAGTCCAAACAAACCAAGAAGTTCTGAAATGCAAAACTCTCCAAGTAGTATCCTTTCAGTGGACATGGAAATGAAGCATAGTGGTGACCATGGAAATAATAGAGATGCCAACACAAAGTTTGGTATTGAAAGGCATCACCAACAAAAAGATGGGTACCCTTTGATGACTAGCAATCCAAACCATGGTGGGGGGTTTGGAGCATTCACCATGGAAGACATTGGAAGCAGATTTAATGTCACTACTGAGCAACTAGCTTCAAGGTTCCATGGAAACGGTGTTTCTCTCACACTTGGACTTCCCCACAATGAGAACCTTTCTATGTCAGGAACTCAACAACATGGGTTCCTCTCACAGAATATACACCTGGGAAGGAGACTTGAAATGGGAACAAATGGAAATGAGTTTTGTACTATCAACACTGCTCCACCTTCTTCTCACTCAGGAACCACTTATGAGAGCATTGATATTCAAAACAGAAAGAGGTTTGTTGCTCATCAGTTATTACCAGATTTCGTGGCCTAG 2109 0.4808 MATYFNGSTSEIQPSADGGLQTLYLMNPTYVPYADAPHHPTTLLVNPNAPNLANIPHAPPVSPNQQHHHVIHGVTSIIGSGNSDDHSRPSLIGENIAAFHGFSGGAGTASTAAPRLHYNLWGPVVDQPGTPSSSSGGGGFRRPSQQGLSLSLSSQQTNFRSVSGELDVAGQGHVAGIGNSPMSASIGVSGVIMGSKYLKAAQELLDEVVNVGKGIYKEEKFSEKVKANRESTNSGAAGDGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRFVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEIKEHEQGNGSENTKSKESSKELASTANVALDHLQSKQESFNNQNTSPTEISTSSSMSPMGGSLQSHSGFHLAGSSDMQIRSPNKPRSSEMQNSPSSILSVDMEMKHSGDHGNNRDANTKFGIERHHQQKDGYPLMTSNPNHGGGFGAFTMEDIGSRFNVTTEQLASRFHGNGVSLTLGLPHNENLSMSGTQQHGFLSQNIHLGRRLEMGTNGNEFCTINTAPPSSHSGTTYESIDIQNRKRFVAHQLLPDFVA* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3263 702 Gene3D - 383 445 - -
Gso11g3263 702 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 658 - -
Gso11g3263 702 MobiDBLite consensus disorder prediction 452 467 - -
Gso11g3263 702 MobiDBLite consensus disorder prediction 468 544 - -
Gso11g3263 702 SMART prehox3 186 332 IPR006563 -
Gso11g3263 702 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Gso11g3263 702 SUPERFAMILY Homeodomain-like 381 446 IPR009057 -
Gso11g3263 702 Coils Coil 264 284 - -
Gso11g3263 702 MobiDBLite consensus disorder prediction 223 254 - -
Gso11g3263 702 Pfam Associated with HOX 191 331 IPR006563 -
Gso11g3263 702 MobiDBLite consensus disorder prediction 452 544 - -
Gso11g3263 702 MobiDBLite consensus disorder prediction 127 156 - -
Gso11g3263 702 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 658 - -
Gso11g3263 702 CDD homeodomain 380 441 IPR001356 GO:0003677
Gso11g3263 702 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Gso11g3263 702 SMART HOX_1 380 444 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3263 Gso-Chr11 48416062 48421142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3263 1 702 Homeobox Transcription Factor Family AT2G35940 46.462 5.59e-146 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso11g3263 POX 3.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3263 - - gmx:100779075 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1591 12 39441674 39446903 Gso11g3263 11 48416062 48421142 GST
Gso11g3263 11 48416062 48421142 Gso12g0773 12 7917775 7923441 PCT
Gso11g3263 11 48416062 48421142 Gso11g1340 11 14984472 14990059 PCT
Gso12g0773 12 7917775 7923441 Gso11g3263 11 48416062 48421142 PCT
Gso11g1340 11 14984472 14990059 Gso11g3263 11 48416062 48421142 PCT