Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3262 ATGCTGTATGAATCTGATATAATGACAGAAATTGAAACTCCTCAATTTTTTCTTTGTCCTATTTCGCTTCAGATCATGAAGGACCCTGTGACAACCGTTACAGGGATAACATACGACAGAGAAAGCATCGAACAATGGTTGCTAAAAGCGAAAGATTGCACGTGTCCAATCACAAAGCAACGATTGCCACGAAGCACAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGCTCAGCAAACGAAGCCAATGGCGTAGACCAAATTCCAACCCCAAAATCCCCTCTTAGCATCGCCAACGTTGAGAAACTCGTGAAGGATCTCGAAGTATCTTCCCGTTTTCAAAGGGCATTGGAGAAGTTGCACGATCTTGCAATAGAGAACGGGAGGAACAGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAAGAGTTTTATCCAAGGTAACAAAACGACCTCGTGCGTTGAAGAGGCTCTGAAAATTCTTGGTTTGCTTTGGAGTAGTGCTAATAATATGGTCGACAACGACAACATGAAGCGCATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGGTTTTGCAGCTTCAAACCAAGAACAACGTTAAGGTAATAAACGAAGCAATGCCAATATTGAAATTGACAATTGAAGCCAAAGATTCAACCCCTTTAGGGAACTTGAAGCTTGAATTCTTTAAAGTTGTTGTGAGTGTGATGAAAAATAGAGAACTCACTCAGCAAGCTGTTAAATCTGCATTGCACGTGCTTATAGAAACCTGTCCTTTGGGGAGAAACAGAATGAAGATAGTTGAAGCAGGTGCAGTGGTGGAACTCATTGAACTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCATATTTATTCTCTTGGCTCATCTTTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAACATGCTGCAGGCATTGCTGTGGTTTCAAAGAGGATCCTTAGGGTTTCACCAACCACTGATGATCGAGCTCTTCATATATTTTCCTTGGTTTCGAAGTTCTCGGCCTCCAATGAGGTCGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAGGAAAAAGCAAGAGGGGTACTTAGGTTGCACTCAAAAACATGGAACAATTCTCCATGTATTCAAGTGTATTTGTTAACCAGATTCCATAGGTGA 1269 0.4295 MLYESDIMTEIETPQFFLCPISLQIMKDPVTTVTGITYDRESIEQWLLKAKDCTCPITKQRLPRSTEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSIANVEKLVKDLEVSSRFQRALEKLHDLAIENGRNRRCMASAGVAEAMVHVITKSFIQGNKTTSCVEEALKILGLLWSSANNMVDNDNMKRMVGENFDFLNSLTWVLQLQTKNNVKVINEAMPILKLTIEAKDSTPLGNLKLEFFKVVVSVMKNRELTQQAVKSALHVLIETCPLGRNRMKIVEAGAVVELIELALEKPEKNMTELIFILLAHLCSCADGREQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNNSPCIQVYLLTRFHR* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3262 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 10 420 - -
Gso11g3262 422 SMART Ubox_2 16 82 IPR003613 GO:0004842|GO:0016567
Gso11g3262 422 CDD RING-Ubox_PUB 17 60 IPR045210 -
Gso11g3262 422 Gene3D - 106 413 IPR011989 -
Gso11g3262 422 PANTHER WDSAM1 PROTEIN 10 420 IPR045185 GO:0061630
Gso11g3262 422 SUPERFAMILY ARM repeat 121 399 IPR016024 -
Gso11g3262 422 Pfam U-box domain 14 87 IPR003613 GO:0004842|GO:0016567
Gso11g3262 422 SUPERFAMILY RING/U-box 10 91 - -
Gso11g3262 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Gso11g3262 422 ProSiteProfiles U-box domain profile. 12 89 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3262 Gso-Chr11 48410209 48411761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3262 10 412 U-box Gene Family AT2G35930 42.260 6.55e-107 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3262 - - gmx:100778547 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1592 12 39465347 39466852 Gso11g3262 11 48410209 48411761 GST
Gso11g3262 11 48410209 48411761 Gso12g0775 12 7958073 7959578 PCT
Gso11g3262 11 48410209 48411761 Gso11g1338 11 14940408 14941999 PCT
Gso12g0775 12 7958073 7959578 Gso11g3262 11 48410209 48411761 PCT
Gso11g1338 11 14940408 14941999 Gso11g3262 11 48410209 48411761 PCT