Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3252 ATGGGTGTCTCTGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGAGAAGGATGGAAATGTTGGCAAGTTTCATCATCAGAGAAGGCATGATGTCGAATTTAATAATGGTAAACTTCCAAACGAATTGGATAATGATGCTACTACACCTGTTGAAGATGTTAATGGCCATGCAAACCTTGATGCCCACTATTCATCTTCTTCTTCACAAGCACATGATGCTGCACATAATCAACAAATGAGGGAGGAATGGGCTGCAATACACATTCAAACAGCATTTAGAGGATTTCTGGCCAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTAGTGAGGGTTCAAGCTCGTGTTCGAGCTAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCATCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAATTATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGTGGATTTGAACCGGATAAAAACAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTCCGTCCTTGGGAGAACCGCTTTGTTGACATAAATATGAAGGATGGAGTAACAGTACATGAAGATGGAACTAAGGATGATAAAAATGAAACCCCACCTCAGTTGAGCTCTGCTTACAAGAAACCATTCTCATCAAACACTCATCCAAACCTGACAAGTCAAGGAACTGGTCCCACTATTTCTGATGGCTGTGATTCTTCATCTAGTATGCCTGCAGGTTTGCCAGAATCATCAAACACACATCCTGTTAAGCCGACTTCTAAGGCAAATGCTGAAAATACTGTTGGAGAATTTAACTCAAAACCTAGAATTGGGTCAAGATCTCTTAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATACAGGGGCTGGTGCTGGATCTCAAATAGTCAAACACCCTGTTAGCATTACTAATGTGAAAGGGACGCTAAGCACGCAAAAGTCTACTAGGGATAAACCTAAGCTCAATGGAAGAAGGGAGGAGAATACAAAGTAG 1275 0.4337 MGVSGKWIKALVGLKKSEKPEKDGNVGKFHHQRRHDVEFNNGKLPNELDNDATTPVEDVNGHANLDAHYSSSSSQAHDAAHNQQMREEWAAIHIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKHQQNLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGGFEPDKNSWGWNWLERWMAVRPWENRFVDINMKDGVTVHEDGTKDDKNETPPQLSSAYKKPFSSNTHPNLTSQGTGPTISDGCDSSSSMPAGLPESSNTHPVKPTSKANAENTVGEFNSKPRIGSRSLSNPKERTSQADKQAKKRLSLPNNTGAGAGSQIVKHPVSITNVKGTLSTQKSTRDKPKLNGRREENTK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3252 424 MobiDBLite consensus disorder prediction 371 410 - -
Gso11g3252 424 MobiDBLite consensus disorder prediction 266 424 - -
Gso11g3252 424 ProSiteProfiles IQ motif profile. 111 138 IPR000048 GO:0005515
Gso11g3252 424 PANTHER IQ-DOMAIN 5-RELATED 2 388 - -
Gso11g3252 424 Gene3D - 88 129 - -
Gso11g3252 424 MobiDBLite consensus disorder prediction 278 364 - -
Gso11g3252 424 PANTHER IQ-DOMAIN 5-RELATED 2 388 - -
Gso11g3252 424 MobiDBLite consensus disorder prediction 65 80 - -
Gso11g3252 424 Pfam IQ calmodulin-binding motif 111 128 IPR000048 GO:0005515
Gso11g3252 424 Pfam IQ calmodulin-binding motif 89 108 IPR000048 GO:0005515
Gso11g3252 424 MobiDBLite consensus disorder prediction 39 82 - -
Gso11g3252 424 ProSiteProfiles IQ motif profile. 87 115 IPR000048 GO:0005515
Gso11g3252 424 SMART iq_5 86 108 IPR000048 GO:0005515
Gso11g3252 424 SMART iq_5 109 130 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3252 Gso-Chr11 48313960 48320447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3252 1 419 IQD Protein Family AT3G22190 54.060 1.21e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3252 - - gmx:100819346 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1601 12 39546850 39554177 Gso11g3252 11 48313960 48320447 GST