Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3248 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACGGTTAGATGTGGACATTGTGCCAATTTGCTGACAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTACTCAGCGATTTTCTACCGTTGGTAAGTTACAGAGACAGCATCTCAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAAACATTTGAGACCGTAGACCATGATCAGCAACCTAGGATTCCTCCTATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGGGATGGTACTCAAAAGTCTAACGGATTTTACTGA 567 0.4374 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNMGASLQTFPSQDTTQRFSTVGKLQRQHLSVQEACSKELGSSSKCKTFETVDHDQQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3248 188 Pfam YABBY protein 7 165 IPR006780 GO:0007275
Gso11g3248 188 SUPERFAMILY HMG-box 110 158 IPR036910 -
Gso11g3248 188 PANTHER PROTEIN YABBY 6-RELATED 3 188 IPR006780 GO:0007275
Gso11g3248 188 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 188 - -
Gso11g3248 188 Gene3D High mobility group box domain 103 161 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3248 Gso-Chr11 48274487 48283635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3248 1 188 C2C2-YABBY Transcription Factor Family AT1G08465 63.158 3.43e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso11g3248 YABBY 3.4e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3248 K25796 - gmx:100815973 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1606 12 39597271 39607331 Gso11g3248 11 48274487 48283635 GST
Gso11g3248 11 48274487 48283635 Gso12g0783 12 8128685 8136161 PCT
Gso12g0783 12 8128685 8136161 Gso11g3248 11 48274487 48283635 PCT