Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso11g3246 | ATGGAGGGTGCTGGGATGGAAGAGAATAATATTATTAATGATGATAATAAGTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCTTTCTGTGATAGTGATCCCTCCACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGGAACTTTAGGTTCAATCCATCTAGAAATGCCACCATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATTATCCAACACTTAGCTGCTGCAGCAGCGATGGGAAGAGCACGGCACGTTGCTAGAAGAGAAGGCCAGAGAAACAGATCATCAGCTCAAGGTCGCCAACATTTTTTGGTTTTTTCAACTCATCCTAATTCACCACCCATGGCTCCTGCTTCTTCCTCTCCATCTCAGAGGGGGGATGATGAACCAACTCCTACAATTGATGTTGCCAATCTGTCTCCAACTCCTGCAACTGGAGAAGAATCATCGCAGCCGACTTTAGTTCCGCCTGTTCAAGCAGAACAGGTGTCTGCTTCAGGATCTGGAACTACTGCTCTTGCTACAGATCATCAGGGATCATCCTACAACAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGACCATCAGAATTACAGTCATTTTCAGAATCTCTGAAATCTAAACTGAATGCTGTGTCAACAAGATACAAGGAATCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCCCGTAACAACACTATGTCTGACCTTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCGACTGTGTCACGCATGATGGAACGCCTGGAGACCAGAGACAATAATAGAAGCAATAGCAATTCTGCTCCAAGTAATATAGAGGATGGTTCAGTGCAGGGATCTAATGATCAGACTTTAACAGCAGGCAATGAAGGGGGCTCTCTTGTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAACTAA | 1197 | 0.452 | MEGAGMEENNIINDDNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHVARREGQRNRSSAQGRQHFLVFSTHPNSPPMAPASSSPSQRGDDEPTPTIDVANLSPTPATGEESSQPTLVPPVQAEQVSASGSGTTALATDHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNTMSDLGSEVRREVNAGIATVSRMMERLETRDNNRSNSNSAPSNIEDGSVQGSNDQTLTAGNEGGSLVRDNNTKASCAAGSSSN* | 399 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso11g3246 | 398 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 6 | 398 | - | - | |
Gso11g3246 | 398 | SUPERFAMILY | RING/U-box | 34 | 89 | - | - | |
Gso11g3246 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 116 | IPR013083 | - | |
Gso11g3246 | 398 | SMART | ring_2 | 41 | 81 | IPR001841 | - | |
Gso11g3246 | 398 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHF2A | 6 | 398 | - | - | |
Gso11g3246 | 398 | MobiDBLite | consensus disorder prediction | 348 | 398 | - | - | |
Gso11g3246 | 398 | MobiDBLite | consensus disorder prediction | 179 | 309 | - | - | |
Gso11g3246 | 398 | MobiDBLite | consensus disorder prediction | 179 | 201 | - | - | |
Gso11g3246 | 398 | MobiDBLite | consensus disorder prediction | 337 | 398 | - | - | |
Gso11g3246 | 398 | Pfam | Ring finger domain | 40 | 81 | IPR001841 | - | |
Gso11g3246 | 398 | MobiDBLite | consensus disorder prediction | 208 | 299 | - | - | |
Gso11g3246 | 398 | ProSiteProfiles | Zinc finger RING-type profile. | 41 | 81 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso11g3246 | Gso-Chr11 | 48242055 | 48245952 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso11g3246 | 38 | 81 | C3H Transcription Factor Family | AT5G15790 | 50.000 | 5.63e-11 | 60.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso11g3246 | K19043 | - | gmx:100814908 | 756.518 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso12g1608 | 12 | 39644556 | 39648517 | Gso11g3246 | 11 | 48242055 | 48245952 | GST |