Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3246 ATGGAGGGTGCTGGGATGGAAGAGAATAATATTATTAATGATGATAATAAGTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCTTTCTGTGATAGTGATCCCTCCACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGGAACTTTAGGTTCAATCCATCTAGAAATGCCACCATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATTATCCAACACTTAGCTGCTGCAGCAGCGATGGGAAGAGCACGGCACGTTGCTAGAAGAGAAGGCCAGAGAAACAGATCATCAGCTCAAGGTCGCCAACATTTTTTGGTTTTTTCAACTCATCCTAATTCACCACCCATGGCTCCTGCTTCTTCCTCTCCATCTCAGAGGGGGGATGATGAACCAACTCCTACAATTGATGTTGCCAATCTGTCTCCAACTCCTGCAACTGGAGAAGAATCATCGCAGCCGACTTTAGTTCCGCCTGTTCAAGCAGAACAGGTGTCTGCTTCAGGATCTGGAACTACTGCTCTTGCTACAGATCATCAGGGATCATCCTACAACAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGACCATCAGAATTACAGTCATTTTCAGAATCTCTGAAATCTAAACTGAATGCTGTGTCAACAAGATACAAGGAATCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCCCGTAACAACACTATGTCTGACCTTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCGACTGTGTCACGCATGATGGAACGCCTGGAGACCAGAGACAATAATAGAAGCAATAGCAATTCTGCTCCAAGTAATATAGAGGATGGTTCAGTGCAGGGATCTAATGATCAGACTTTAACAGCAGGCAATGAAGGGGGCTCTCTTGTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAACTAA 1197 0.452 MEGAGMEENNIINDDNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHVARREGQRNRSSAQGRQHFLVFSTHPNSPPMAPASSSPSQRGDDEPTPTIDVANLSPTPATGEESSQPTLVPPVQAEQVSASGSGTTALATDHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNTMSDLGSEVRREVNAGIATVSRMMERLETRDNNRSNSNSAPSNIEDGSVQGSNDQTLTAGNEGGSLVRDNNTKASCAAGSSSN* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3246 398 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 6 398 - -
Gso11g3246 398 SUPERFAMILY RING/U-box 34 89 - -
Gso11g3246 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 116 IPR013083 -
Gso11g3246 398 SMART ring_2 41 81 IPR001841 -
Gso11g3246 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 6 398 - -
Gso11g3246 398 MobiDBLite consensus disorder prediction 348 398 - -
Gso11g3246 398 MobiDBLite consensus disorder prediction 179 309 - -
Gso11g3246 398 MobiDBLite consensus disorder prediction 179 201 - -
Gso11g3246 398 MobiDBLite consensus disorder prediction 337 398 - -
Gso11g3246 398 Pfam Ring finger domain 40 81 IPR001841 -
Gso11g3246 398 MobiDBLite consensus disorder prediction 208 299 - -
Gso11g3246 398 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3246 Gso-Chr11 48242055 48245952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3246 38 81 C3H Transcription Factor Family AT5G15790 50.000 5.63e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3246 K19043 - gmx:100814908 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1608 12 39644556 39648517 Gso11g3246 11 48242055 48245952 GST