Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3239 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCCTCCCCCACGAGCCAATAGTCTTAAACTCCTTCCCTGAAGACAACAAAGACAACAACAGTCGCCAACAACACAAGTGGAAACTTGGTACAAACATGGATGCCACTGTTAGCAGAAAGAGTTCTCCATCATCCACTTCTAACACTAACACCACCATCCCCTTCCAAGACCACCTTACCTCTGATGACAAGATGCCTCACCTCGACGAGATGAACTTCTTCCCCAACAAAAGCAACAAGGATGATGACGATGACAACAACCTTGCCTCTGCCTCCACCTCTACACCTCCCTCCCTTGACCACCTTCATCACACACATGATCATTCCTCCGCTATCTTGGGATTGAAAGTAAACACTGGTTTGAATCTTCTTACTACCAATGCAAGCAGTGATCAATCTATGGTGGTGGACGATGACATATCCCCTAATTCAGGAGACAAACGAGCTAAGAGTGAGATGGTTGTTCTTCAAGTTGAGCTTGAGAGAATGAAGGTGGAGAATCATAGGCTGAAGAACATGCTTGATCAGGTTAACAACAATTACAATGCCTTGCAGACGCATTTGGTGAGTTTGATGAAGGACCAGATGGACAAGGAGGATGATAAACAACAACCGCATCAAGTGTTTGATGGAAAACTAGAAGAGAAGCAAGCTGGGAATGGTGGTGGAGCCTTGGTGCCAAGACAATTTATGGATCTTGGATTGGCCACTAATGCTGACACCAATGAAACTTCGCATTCCCATTCTTCGTCCGTGATAAGAAGTCAGGATTCACCACCAACAAATAATACAGAGGTGGCATCCAAGAAGAATGGGGGTGCTAGTGATGAAGGACTAGTGTTTGATCAAGACAAGAAGGAATTTGGTAGGGGAATTGAAAGAGAGGATAGTCCCTCGGATCAAGGGGTAGCTGCTAATAACAATGTTCCAAAGTTTAGTCCTCCAAGAAATGTTGATCAAGCTGAGGCCACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCTATGATAACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGTGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACAGAACAATACTGATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACTTCCTCGGCAGCAAGAATGCTGCTTTCAGGATCAATGTCAAGTGCTGATGGCCTAATGAATGCAAGCTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCAACTATCTCAGCCTCAGCTCCATTCCCAACTGTTACATTGGACTTGACTCAGTCTCCAAATCCATTGCAGTTCCCAAAGCAACCAAGCCAATTCCAAATCCCCTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCACAAGCCTCATTGCTGCCTCAGATATTTGGTCAGGCACTTTATAACCAATCCAAGTTTTCTGGCCTTCAAATGTCTCAAGATTCAGACCCTTCCCAATTGAGTAATCAATCTCAAAGGCCACCACCACACCTTGCTGACACAGTTAGTGCTGCCATTGCAGCTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCCATCACTTCCATTATTGGGGGTGCACAGCCAAACAACAATAGTACTACCAGTACTAATTATAATGGCACCACATCGACCAACACCAGCAATGGCAATATTACATCAAGCAACAACAAATAA 1842 0.4587 MARGGGLSIDSDPIGSFLPHEPIVLNSFPEDNKDNNSRQQHKWKLGTNMDATVSRKSSPSSTSNTNTTIPFQDHLTSDDKMPHLDEMNFFPNKSNKDDDDDNNLASASTSTPPSLDHLHHTHDHSSAILGLKVNTGLNLLTTNASSDQSMVVDDDISPNSGDKRAKSEMVVLQVELERMKVENHRLKNMLDQVNNNYNALQTHLVSLMKDQMDKEDDKQQPHQVFDGKLEEKQAGNGGGALVPRQFMDLGLATNADTNETSHSHSSSVIRSQDSPPTNNTEVASKKNGGASDEGLVFDQDKKEFGRGIEREDSPSDQGVAANNNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNASFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKQPSQFQIPFPGVPQNFANSQASLLPQIFGQALYNQSKFSGLQMSQDSDPSQLSNQSQRPPPHLADTVSAAIAADPNFTAALAAAITSIIGGAQPNNNSTTSTNYNGTTSTNTSNGNITSSNNK* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3239 613 Gene3D WRKY domain 342 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g3239 613 MobiDBLite consensus disorder prediction 1 121 - -
Gso11g3239 613 PANTHER OS05G0567200 PROTEIN 65 604 - -
Gso11g3239 613 Coils Coil 169 210 - -
Gso11g3239 613 MobiDBLite consensus disorder prediction 255 333 - -
Gso11g3239 613 MobiDBLite consensus disorder prediction 580 613 - -
Gso11g3239 613 SUPERFAMILY WRKY DNA-binding domain 350 418 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g3239 613 MobiDBLite consensus disorder prediction 316 330 - -
Gso11g3239 613 MobiDBLite consensus disorder prediction 530 552 - -
Gso11g3239 613 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 65 604 IPR044810 GO:0003700
Gso11g3239 613 MobiDBLite consensus disorder prediction 255 286 - -
Gso11g3239 613 ProSiteProfiles WRKY domain profile. 352 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g3239 613 MobiDBLite consensus disorder prediction 76 103 - -
Gso11g3239 613 SMART WRKY_cls 357 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g3239 613 Pfam WRKY DNA -binding domain 359 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g3239 613 MobiDBLite consensus disorder prediction 295 313 - -
Gso11g3239 613 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3239 Gso-Chr11 48177242 48180155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3239 133 581 WRKY Transcription Factor Family AT1G62300 52.979 3.19e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso11g3239 WRKY 3.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3239 - - gmx:100127384 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3239 11 48177242 48180155 Gso12g0796 12 8313142 8316672 PCT
Gso11g3239 11 48177242 48180155 Gso6g2528 6 47012966 47016470 PCT
Gso12g0796 12 8313142 8316672 Gso11g3239 11 48177242 48180155 PCT
Gso6g2528 6 47012966 47016470 Gso11g3239 11 48177242 48180155 PCT