Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3238 ATGGAGTGGACTAGAGGCTTCATTATAGGACGTGGCTCATCGGCCACCGTTTACACCGTCACCTCCTCTCACTCCTCCACCGTCGCGGCCGTCAAGTCGGCAGAGCTAACACTATCAAATTCAGAGCAGCTGCAGAGAGAACAGAGGATTCTGTCTTGTCTGTTTTCTCCTCACATAGTTACCTACAAAGGCTGTAACATTACAGAGGACAAGAACAACACCCTTTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACTCTCTCACAGGAAATTCACCGGCGCGGTGGTGGCCGCCTCAGCGAGCCAGCCACCGTGCACTACACGCGACAAGTCCTGCAGGGCTTAGAGTACTTGCACAATAATGGTGTTGTGCATTGCGATATTAAAGGTGGCAACATTTTGATTGGTGAAGATGGGGCCAAGATTGGGGACTTTGGATGTGCCAAGTTTGCGAATGATTCCTCGGCGGTGATCGGTGGCACGCCGATGTTCATGGCTCCGGAGGTGGCGCGTGGGGAGGAGCAGGGTTACCCTGCTGATGTGTGGGCACTTGGGTGCACTGTGCTTGAAATGGCCACTGGGTTTGCACCATGGCCTAATGTGGAAGACCCTGTGACAGTGTTGTACCATGTTGCATATTCCGATGATGTTCCTGAGATTCCTTGTTTTCTGTCTGAGGAAGCAAAGGATTTTTTGGGGAAGTGTTTTAGGAGGAATCCTAAGGAGAGGTGGAGTTGCAGTCAGCTTCTGAAGCATCCATTTCTTGGGGAATTCAGTTCCAATGATAAGGAAATTCAAGAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGCGCTTTTGGAATTCTGTGGAAGAGGCAGAGGCAGAGTGTGTCTCTGTCTCTGGCAATGTGGTTCAGATTAAAAGTTTTGAGGATTCTCCCATGGACAGGGTCAGAAGTCTTGCTTTGAGCTCAGGGGATCCATTTTGGGAACTGGATGATGAAAATTGGATCACAACAAGAGGCAGTGAAGCAGGGGCTTCGAGTTGTGATGGGTTGAATTTGGATGTTAATAGTAGAATTAGTGGTTATTTATGTGATGATTATTATAAATGTAGGGATGTTAGTGTTGTAGTTGATAATTTCAATTTTGAGAGAGGCAATTCTGAGATGCTTCTCCCTTTAAAATTGGAATTTTTTTTATAA 1197 0.4678 MEWTRGFIIGRGSSATVYTVTSSHSSTVAAVKSAELTLSNSEQLQREQRILSCLFSPHIVTYKGCNITEDKNNTLWFNLFMEYMPFGTLSQEIHRRGGGRLSEPATVHYTRQVLQGLEYLHNNGVVHCDIKGGNILIGEDGAKIGDFGCAKFANDSSAVIGGTPMFMAPEVARGEEQGYPADVWALGCTVLEMATGFAPWPNVEDPVTVLYHVAYSDDVPEIPCFLSEEAKDFLGKCFRRNPKERWSCSQLLKHPFLGEFSSNDKEIQESNSCSPTSILEQRFWNSVEEAEAECVSVSGNVVQIKSFEDSPMDRVRSLALSSGDPFWELDDENWITTRGSEAGASSCDGLNLDVNSRISGYLCDDYYKCRDVSVVVDNFNFERGNSEMLLPLKLEFFL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3238 398 Gene3D Transferase(Phosphotransferase) domain 1 2 314 - -
Gso11g3238 398 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3238 398 SUPERFAMILY Protein kinase-like (PK-like) 4 299 IPR011009 -
Gso11g3238 398 Pfam Protein kinase domain 8 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3238 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Gso11g3238 398 PANTHER MAP KINASE KINASE KINASE 1 360 - -
Gso11g3238 398 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3238 398 CDD STKc_MAPKKK 2 257 - -
Gso11g3238 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 360 - -
Gso11g3238 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3238 Gso-Chr11 48158073 48159315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3238 1 287 MAP Kinase Kinase Kinase AT2G32510 51.864 1.39e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso11g3238 Pkinase 1.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3238 K20716 - gmx:100786897 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1625 12 39818115 39819421 Gso11g3238 11 48158073 48159315 GST
Gso11g3238 11 48158073 48159315 Gso12g0798 12 8350882 8352223 PCT
Gso11g3238 11 48158073 48159315 Gso6g2527 6 47001104 47002444 PCT
Gso12g0798 12 8350882 8352223 Gso11g3238 11 48158073 48159315 PCT
Gso6g2527 6 47001104 47002444 Gso11g3238 11 48158073 48159315 PCT