Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3237 ATGGAGCTTCGTTCTCGTCGACGCCTCTCCAATCCTTCAGTTTCCGGGAAGGAGCAACCACCTGGGGATGATGCTGTTGGGGAAGATGAAACTACTACTGGCAAGGGCAGTAACAATAAAGACAAAGGTGTTGCTGTTATATCATCAAATTCAGATATAGTTTCTGGTCCTGATTCAGATTCTGATTACGAAGATGAAGAATTTGGTGTTGGCTCCTTACCTGACTTGAATCAAGATCCTTCAAGCATTAGTGTTTCTAGTGCAGAAGATTATGCTTCTGATTCATCTGATGGTGGCAAGTCTTCGTACAAAAGAGGAAAGGCGCTGCTGTCCAGAGGGAAAAGAAAAAGTTTCAACACTGAATATGGAGAACCAAGTGACGTGGTTAGAGTAGCGGAGTACAAAGATGATGATGCTCAATTTGCAATCTTTCAGGAACTATCAGTTCCGTCTGTTTCTAAGGGTACTAAGAGGAGGAAATATTCAAGAAAAGGAAGAAAAGGAGATTCAAAGCCTGTGTTGTTGTGGAATGCGTGGGAAGAGGAGCAAGAGAAATGGATTGATAGGCATATGTTAGAAGATGTTGACTTGGATAATCATAGTGAGGTAATGAATGAAACTGCTGACATACCCTCTGATCTGACAATGCCTTTACTTAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGTTCTGCAAGTAAAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTGTTCAAGCAATTGCTCTTGTCCTCGCCAAACGTGAATTTGAACTAGGTTGTGAACCAGATCAATCCATACCATGTTCATCCAGCCTGAAGCCTGCGATCAAAGGAACGCTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGGTTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGATTTATCATGGGGCAAATAGAGGGAGGAGTGGGAATCGGTTTGCAGATTATGATTTTGTGATAACTACGTACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGTTGCCTCCAAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCGAATAAGTTGATGTATCATCAGATTTATTTTTGTGGTCCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGAAAAGAGAAGTTACCAAGGGGAAGACCAAGAAATCTGACAGTAAGATATCAAAGAGTTCTAACACGAAAAAGGAAGAGGAAATGTGGATGGATGAAGAAGATTTAGATGCACCTGTGCGTAGCGATAGGTCAATTCTTCATGCTGTGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGTAACACTGCCAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCGCTAAGTGGCACCCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCATAGCACTAAAGAATGTTCAGTTTGCACCCACAGTTCTGTGCGGCATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTATGGAAATGGGGATGCTGGGAAAAGAGCCATGATATTGCTCAAACACAGAGTTTTGAAGAACATAGTATTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCTTGGATATTAAAGAGCAAGATTATTATGAATCATTATACAATGAAAGTCAGGCACAATTTAATACATATATTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGACTGCGTCAGGCAGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAGTGGAGTTCTGTCTAATAATGTTACTGTTGAACAAGTTTGTGGCATTTGCCATGAGCCAGTTGAAGATGTTGTGGTTACCTCCTGTGAACATGCATTTTGCAAGGCATGCTTGATAGACTTCTCTTCTTCCTTGGGACGAGTTTCATGCCCCACATGCTCTAAGTTACTTACTGTTGATTTAACATCCAACAAGGATGTTGGGGATCAGGCTAATAAAACAACAATTAAGGGTTTTAGATCCTCAAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTCTGAGGGAAGAGATAAGATTCATGGTTGAAAGGGACGGCTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCCTGGATCTTATAAACTACTCTTTGCACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACAGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATACAAGCCTATAAGAATTGTGAGGTTTGTCATTGAAAACACAATCGAGGAGAGAATTCTGAAACTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTTGGGAAATTGACAGAGGCAGACTTGAGATTTTTATTTGTTACCTAA 2775 0.4141 MELRSRRRLSNPSVSGKEQPPGDDAVGEDETTTGKGSNNKDKGVAVISSNSDIVSGPDSDSDYEDEEFGVGSLPDLNQDPSSISVSSAEDYASDSSDGGKSSYKRGKALLSRGKRKSFNTEYGEPSDVVRVAEYKDDDAQFAIFQELSVPSVSKGTKRRKYSRKGRKGDSKPVLLWNAWEEEQEKWIDRHMLEDVDLDNHSEVMNETADIPSDLTMPLLRYQKEWLAWALKQESSASKGGILADEMGMGKTVQAIALVLAKREFELGCEPDQSIPCSSSLKPAIKGTLVICPVVAVTQWVSEVDRFTLKGSTKVLIYHGANRGRSGNRFADYDFVITTYSVVESEYRKHMLPPKERCPYCGKLFLPNKLMYHQIYFCGPDAVRTEKQSKQAKKKKREVTKGKTKKSDSKISKSSNTKKEEEMWMDEEDLDAPVRSDRSILHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSTKECSVCTHSSVRHFCWWNKYVATPIQSYGNGDAGKRAMILLKHRVLKNIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRSGVLSNNVTVEQVCGICHEPVEDVVVTSCEHAFCKACLIDFSSSLGRVSCPTCSKLLTVDLTSNKDVGDQANKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3237 924 ProSitePatterns Zinc finger RING-type signature. 685 694 IPR017907 -
Gso11g3237 924 Gene3D - 594 922 IPR027417 -
Gso11g3237 924 MobiDBLite consensus disorder prediction 1 106 - -
Gso11g3237 924 PANTHER BNAA08G28190D PROTEIN 150 921 - -
Gso11g3237 924 Pfam SNF2-related domain 233 647 IPR000330 GO:0005524|GO:0140658
Gso11g3237 924 MobiDBLite consensus disorder prediction 401 427 - -
Gso11g3237 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 572 IPR027417 -
Gso11g3237 924 CDD SF2_C_SNF 752 879 - -
Gso11g3237 924 SMART helicmild6 785 868 IPR001650 -
Gso11g3237 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 733 IPR013083 -
Gso11g3237 924 SMART ultradead3 214 505 IPR014001 -
Gso11g3237 924 SMART ring_2 670 709 IPR001841 -
Gso11g3237 924 ProSiteProfiles Zinc finger RING-type profile. 670 710 IPR001841 -
Gso11g3237 924 Pfam Helicase conserved C-terminal domain 754 868 IPR001650 -
Gso11g3237 924 Gene3D - 220 356 IPR038718 -
Gso11g3237 924 Pfam Zinc finger, C3HC4 type (RING finger) 670 709 IPR018957 GO:0046872
Gso11g3237 924 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 750 914 IPR001650 -
Gso11g3237 924 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 500 IPR014001 -
Gso11g3237 924 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 150 921 - -
Gso11g3237 924 MobiDBLite consensus disorder prediction 386 427 - -
Gso11g3237 924 MobiDBLite consensus disorder prediction 75 99 - -
Gso11g3237 924 CDD DEXDc_SHPRH-like 218 572 - -
Gso11g3237 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 922 IPR027417 -
Gso11g3237 924 Gene3D - 373 591 IPR038718 -
Gso11g3237 924 MobiDBLite consensus disorder prediction 37 57 - -
Gso11g3237 924 SUPERFAMILY RING/U-box 666 716 - -
Gso11g3237 924 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3237 Gso-Chr11 48145268 48152771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3237 147 924 RAD5 or RAD16-like Gene Family AT1G05120 67.522 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g3237 SNF2_N 5.2e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3237 K15083 - gmx:100786366 1769.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1627 12 39825022 39832501 Gso11g3237 11 48145268 48152771 GST