Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3234 ATGGCGAGAACAGTCTCCAACAACGACGATGAAACAGCAGCGAAAGAAGAGGGTGAGGTGAAAGATGGCGTAAGGAAGGGGCCATGGACCCCAGAAGAAGACGCGATCCTGATGGAGTACGTGAAGAAGCACGGCGAAGGGAATTGGAACTCTGTGCAGAAGAATTCTGGTTTGTTAAGGTGCGGCAAAAGTTGCAGACTCAGATGGGCCAATCATCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCAGAAGAAGAACAAGTCATAATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCGCGAATGGCAGCACAGTTACCTGGTAGGACCGACAATGAAATAAAGAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCATTTATCCTCCTGAAGTTCATGCAGAAGCCAATGCTTACCATCTACAACACCACCGCTACTTGGAACAACAACAACCACCACCTTATTCATCTTCATCATTTTCTCTTCTCCTATCTTCATGTTACCCCAAGAAGCTCAATGATCCAAACCAAATCCATCACCATTCCAGTGCAAATCCAATGCAAAACCAACCTGATCATTCTGCCGACCGTTCCATCAATCCAAGCCAGCAATTCAAGTTTTCCAATGAAAACAGTACTGGAAACAATGGAAACTTTGCTTTTCCAATGTCTCCTCTTTCTCCATATGGATCATCCTCCTCCACCCTTCTTAACCACAGTTTTGGTGGTGATCATGGTGGCTTCATTGCAGGATCTCCCTATGAACAACCCTTTCCTTTGGTGCAAGGCTCCACCACTGACATCTCTTCCAACCAAACTCCAACCCCTGCTTCATCCTATGCTAGTGGGGTTGATGGCTTGATGGGAGCTTCAAGCATGGTTAATAATAACAATAATAACAATGATTACTATGAAGTTGCACCATTATCTCCTCATCAAGGAAACAGTGGCCTGTTGGATGCTCTAGTAATGGAGGCTCAGGGACTTTATCACAATGAGAAGTCAAGGAGTGAGGAGGACTTAAACTTAGCTGGGAAGTTGTCTTGTAAGAGAAAGAACATGGAATACGCAGAGGAGGGAGGCACTGTGCCAGCTGGGGTGTCAGCCATGAAGAAGAACAGTGGCAACAGTAGTAATGAAAGCCAGAGGGATGATGATATTAGCTCCTCTCAATTGTCAAAAGGGAAGAAACAAATTGGCGAGGACCCGTTGGAAGAGATGAATGGGATGGACGATGACTTGGTTAGCCTGCTCAACCAATTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGTAGAGGAGAAAATCAGTCATTGGGACTTGAAAATCAGCCCAAAGCTTCATCACCAGACCCCGCTGATCATGAACATGCTTGGACTCTCGGAACTTGCTGGAACAACATGCCTCGCATATGCTAA 1440 0.459 MARTVSNNDDETAAKEEGEVKDGVRKGPWTPEEDAILMEYVKKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSPEEEQVIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPEVHAEANAYHLQHHRYLEQQQPPPYSSSSFSLLLSSCYPKKLNDPNQIHHHSSANPMQNQPDHSADRSINPSQQFKFSNENSTGNNGNFAFPMSPLSPYGSSSSTLLNHSFGGDHGGFIAGSPYEQPFPLVQGSTTDISSNQTPTPASSYASGVDGLMGASSMVNNNNNNNDYYEVAPLSPHQGNSGLLDALVMEAQGLYHNEKSRSEEDLNLAGKLSCKRKNMEYAEEGGTVPAGVSAMKKNSGNSSNESQRDDDISSSQLSKGKKQIGEDPLEEMNGMDDDLVSLLNQFPLEMPMPEWYRRGENQSLGLENQPKASSPDPADHEHAWTLGTCWNNMPRIC* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3234 479 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 455 - -
Gso11g3234 479 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Gso11g3234 479 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 455 - -
Gso11g3234 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Gso11g3234 479 MobiDBLite consensus disorder prediction 9 28 - -
Gso11g3234 479 MobiDBLite consensus disorder prediction 376 403 - -
Gso11g3234 479 CDD SANT 81 122 IPR001005 -
Gso11g3234 479 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Gso11g3234 479 CDD SANT 28 73 IPR001005 -
Gso11g3234 479 MobiDBLite consensus disorder prediction 180 226 - -
Gso11g3234 479 MobiDBLite consensus disorder prediction 1 28 - -
Gso11g3234 479 MobiDBLite consensus disorder prediction 367 416 - -
Gso11g3234 479 MobiDBLite consensus disorder prediction 441 465 - -
Gso11g3234 479 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Gso11g3234 479 SMART sant 78 126 IPR001005 -
Gso11g3234 479 SMART sant 25 75 IPR001005 -
Gso11g3234 479 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Gso11g3234 479 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Gso11g3234 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Gso11g3234 479 Gene3D - 81 127 - -
Gso11g3234 479 Gene3D - 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3234 Gso-Chr11 48095329 48099345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3234 20 479 MYB Transcription Factor Family AT2G32460 38.491 3.33e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g3234 Myb_DNA-binding 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3234 K09422 - gmx:100784779 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1631 12 39881716 39885704 Gso11g3234 11 48095329 48099345 GST