Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3227 ATGGAGGTGCTGTGGGTCACAAGGCATGGACGAATGTTTGAGGGGAGGGTGTTGTTGCTCTTGGTTTTGTTCTTGTGGATTCCCGCACAGGTGGTGGTGGGAAGGACAAGAACTACCATCACAAACTCTACTACTTCTTCAGCACCAAGAGTTTTAAGAGTTGGAGCACTGTTTACTCTTAATTCTATAATTGGAAGATCGGCAAAACCTGCACTTATGGCTGCTTTCGAAGATGTTAATGCTGATTCGAGTGTTCTCCCTGGCATTCAGCTGAAAGTTATTTTACATGATACAAATTGCAGTGGGTTTGTTGGAACAATGGAAGCTTTGCAGTTGATGGAGGATGAAGTGATTGCTGCCATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTTGTCAATGAACTCCATGTCCCTCTTGTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACGCAAAGTGACTACTATCAGATGCATGCAATTGCAGACTTGGTTGATTACTACAGATGGAGGGAGGTAATAGCCATTTATGTAGATGATGACAATGGAAGGAATGGAATTACAGTACTTGGAGATGCTCTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGTGCGCTCAAGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAATCACGGGTCTTTGTTCTTCATGTTAATCCTGAAACTTTTTTGAATATCTTCACTATTGCTAATAAGCTAGGAATGATGAACAGTGGCTATGTGTGGATTGCAAGCGATGCACTTGCTTCGACACTCGATTCATTAGACCCAGTTGATCCTAACACAATGAACCTCCTACAAGGGGTTTTGGTTTTGCGTCATCACACTCCCGATACTAATGAAAAGAAGAGTTTTCTCTCAAGGATGAAGAGACTAAAAACCAAGGAGACTCCAAGCTTCAATTCCTATGCATTGTATGCATATGATACTGTTTGGTTAGTAGCCCGTGCTCTTGATGCTTTTCTCAAAAAAGGTAGTGTCGTATCTTTCTCCTCTGACCCTAAGTTGCTCGACACAAATGGAAGCATGTTGCATTTACAATCGCTTCGTGTTTTTGATGATGGCCCTTCGTTTCTTGAGACAATTTTGAGCACCAATTTCTCTGGTCTGACTGGAACAGTTCAGTTTGATATTGAAAGGAATAGAAATCATCCAGCATATGATATCTTGAATATTGGTGGTTCTGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGACTCCAGAAATTTTGTATAAGAAACCACCTAACACTTCAACAAGCAGTCAGCAACTGTATGGTGTTATATGGCCTGGAGAAACTGCAGCTAAACCAAGAGGTTGGGTGTTCCCCAACAATGGAAAGCCACTGAGAATAGCAGTTCCTAACCGAGTAAGCTACAAGGAGTTTGTTTCTAAAGACAAGAACCCTCCTGGAGTAAGAGGCTATTGCATTGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGAGAATATATATTATTTGGACCTGGTAATAGAAATCCTAGCTATGATGACCTTGCAAGTCAGGTTGCACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCAAACAGGACAAGGATTTTGGATTTTACTCAACCTTATATGGAATCAGGGCTGGTTGTTGTTGTTCCTGTCAAGGAGACCAAATCAAGTCCTTGGTCTTTCCTCAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATCTTTGTGGGAACTGTTGTATGGATTCTTGAGCACCGGCACAATCCAGAGTTCCGTGGTAGACCGAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGTTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAAATTGAAGGCATTGACAGCTTGATATCAGGTACTCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGCAAGTATTTGACAGAGGAACTCAATATACAACCATCAAGGATAGTTACGTTGAAAAATATGGAGGCATATATTGATGCCCTCGAGAAAGGACCAAAAGATGGAGGGGTTGTGGCCGTTGTTGATGAGCTTCCTTATATTGAAATATTAATGTCAAGTACCAACTGTAAGGTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTCGCATTCCAGAGAGACTCTCCCCTTGCTGTTGAAATGTCAACCGCCATTCTTCAACTCTCGGAGAATGGTGACCTGCAAAAGATCCATGATAAATGGCTTTTGAAACATGATTGTTCTGCACCAGATAATGATGCTGATTTAAATAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTCTCCTTGCTTTGGTTGCATTCTCCATTAGAGTGCTATGTCAATACACAAAATTCAGCCCAGAACCCGAGCAAGACGACGAGGAAACTTCACCAAATAGGCCTACTAAAGGTAAAAGGCTTTTCAGAAGCACTACTAGCTTCAGGGACTTAATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAGGCAGAAGAGTAAGAAAAGGAGACGCAACTTGAGCTTAGATGGCCAATCTAGTTCACCCACCTAA 2844 0.4184 MEVLWVTRHGRMFEGRVLLLLVLFLWIPAQVVVGRTRTTITNSTTSSAPRVLRVGALFTLNSIIGRSAKPALMAAFEDVNADSSVLPGIQLKVILHDTNCSGFVGTMEALQLMEDEVIAAIGPQSSGIAHVISHVVNELHVPLVSFGATDPSLSSLQYPYFVRSTQSDYYQMHAIADLVDYYRWREVIAIYVDDDNGRNGITVLGDALSKKRAKISYKAAFPPGALKKDISDLLNGVNLMESRVFVLHVNPETFLNIFTIANKLGMMNSGYVWIASDALASTLDSLDPVDPNTMNLLQGVLVLRHHTPDTNEKKSFLSRMKRLKTKETPSFNSYALYAYDTVWLVARALDAFLKKGSVVSFSSDPKLLDTNGSMLHLQSLRVFDDGPSFLETILSTNFSGLTGTVQFDIERNRNHPAYDILNIGGSGMRRIGYWSNYSGLSVVTPEILYKKPPNTSTSSQQLYGVIWPGETAAKPRGWVFPNNGKPLRIAVPNRVSYKEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPREYILFGPGNRNPSYDDLASQVALNNYDAAVGDVTIVPNRTRILDFTQPYMESGLVVVVPVKETKSSPWSFLKPFTAQMWCVTGAFFIFVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALEKGPKDGGVVAVVDELPYIEILMSSTNCKVRTVGQEFTKSGWGFAFQRDSPLAVEMSTAILQLSENGDLQKIHDKWLLKHDCSAPDNDADLNKLSLSSFWGLFLICGIACLLALVAFSIRVLCQYTKFSPEPEQDDEETSPNRPTKGKRLFRSTTSFRDLIYFVDKKEKEIKEILRQKSKKRRRNLSLDGQSSSPT* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3227 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 930 - -
Gso11g3227 947 Gene3D - 482 597 - -
Gso11g3227 947 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Gso11g3227 947 Gene3D - 71 415 - -
Gso11g3227 947 Coils Coil 915 935 - -
Gso11g3227 947 PIRSF IGluLR_plant 12 946 IPR017103 -
Gso11g3227 947 MobiDBLite consensus disorder prediction 881 896 - -
Gso11g3227 947 CDD GluR_Plant 485 828 - -
Gso11g3227 947 SUPERFAMILY Periplasmic binding protein-like II 463 829 - -
Gso11g3227 947 Gene3D - 598 723 - -
Gso11g3227 947 Pfam Receptor family ligand binding region 69 424 IPR001828 -
Gso11g3227 947 PANTHER GLUTAMATE RECEPTOR 3.4 40 930 - -
Gso11g3227 947 Gene3D - 167 440 - -
Gso11g3227 947 Pfam Bacterial extracellular solute-binding proteins, family 3 542 829 IPR001638 -
Gso11g3227 947 SMART GluR_14 488 830 IPR001320 GO:0015276|GO:0016020
Gso11g3227 947 MobiDBLite consensus disorder prediction 881 902 - -
Gso11g3227 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Gso11g3227 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Gso11g3227 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Gso11g3227 947 CDD PBP1_GABAb_receptor_plant 53 443 IPR044440 -
Gso11g3227 947 Pfam Ligand-gated ion channel 830 861 IPR001320 GO:0015276|GO:0016020
Gso11g3227 947 Gene3D - 724 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3227 Gso-Chr11 48014870 48020870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3227 16 795 Ion Channels AT1G05200 65.609 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3227 K05387 - gmx:100783715 1860.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1640 12 39990305 39996465 Gso11g3227 11 48014870 48020870 GST
Gso11g3227 11 48014870 48020870 Gso12g0817 12 8678900 8685041 PCT
Gso11g3227 11 48014870 48020870 Gso6g2507 6 46795030 46801322 PCT