Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3225 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATTGGAAGAAACGGAACCGTTGGTGGCTTTGGATTATCTTCAGGGCTTTCTCTTGGCCAGATTGAAAACCATAAGGCTTCGGAATCTCAAAGATCTGAAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAGCTCCACCCACTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCAAGAATCCGTGAAGATGACTTTGACAGTGCCACCAAGTCAGGTAGTGAAAACCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACATGAACGCCATGAGAACACACAGCTGAGAACTGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTTCAGGGAAGCTCTCGGCAATGCCTCGTGTCCTAACTGTGGTGGGCCAACCGCCATTGGGGAAATGTCATTCGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTGAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCAAAGTATGTTGGGAAGCCTGTGGTGAGCTATCCACTTGTTTCTCCTTCATCTATTCCTCCGCGCCCACTAGAGCTTGGGATTGGAGGTGGTTTTGGTGGCCAACCTGGAGGCACTGGTGGGGATATGTATGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATAAGTGGACCTACTGAAGCTGATAAGCCAATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCGCAAATGGGTGAGCCTCTCTGGTTGACTACCCTGGATGGCACAACTGTGCTCAACGAGGATGAGTACATCAGGTCCTTTCCTCGAGGGATTGGTCCTAAACCTGCTGGTTTCAAGTTTGAAGCTTCGAGGGAAACGGCTGTTGTTATCATGAACCATGTTAACCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTGTTCGCTGGCATAGTCTCAAGAGCAATGACTTTGGAAGTGTTATCAACAGGGGTGGCAGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTGAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAGTGGACGTGTCATTGGATAATTTGCGTCCTAGTCCTTCTGCCAGATGTAGAAGAAGGCCCTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATATGGGTTGAGCATGTAGAAGTGGATGACAGAGGTGTCCATAATCTATACAAGCAGCTTGTTAGCTCTGGGCATGCATTTGGGGCAAAACGTTGGGTTGCAACCTTGGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGCATGTTGAAACTTGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCATCCACTGCACACACATGGACGACACTTTCTGGAACTGGTGCTGATGATGTAAGGGTGATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCTCCCGGCATCGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCTGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACAGGATCTTTTGTGATATATGCTCCTGTAGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCGGACTACGTGGCTCTTCTTCCTTCAGGATTTGCTATACTCCCAGATGGAACCACTGCACATGGAGGTGGCATTGGTGACACTGGACATGGTGGTTCTCTCTTGACTGTGGCATTTCAAATATTGGTTGATTCGGTTCCAACCGCAAAGCTTTCTCTTGGATCTGTTGCTACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGA 2346 0.4804 MPAGIMIPARNMPSMIGRNGTVGGFGLSSGLSLGQIENHKASESQRSEEMFQPNLMEAGQLHPLDMPQNTSESDVPRIREDDFDSATKSGSENLEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLVSPSSIPPRPLELGIGGGFGGQPGGTGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTVLNEDEYIRSFPRGIGPKPAGFKFEASRETAVVIMNHVNLVEILMDVNQWSTVFAGIVSRAMTLEVLSTGVAGNYNGALQVMTAEVQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGDTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3225 781 CDD START_ArGLABRA2_like 298 521 - -
Gso11g3225 781 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Gso11g3225 781 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Gso11g3225 781 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Gso11g3225 781 MobiDBLite consensus disorder prediction 82 117 - -
Gso11g3225 781 CDD homeodomain 109 167 IPR001356 GO:0003677
Gso11g3225 781 Gene3D - 96 183 - -
Gso11g3225 781 SUPERFAMILY Bet v1-like 542 773 - -
Gso11g3225 781 SMART START_1 303 522 IPR002913 GO:0008289
Gso11g3225 781 ProSiteProfiles START domain profile. 294 525 IPR002913 GO:0008289
Gso11g3225 781 SUPERFAMILY Bet v1-like 294 524 - -
Gso11g3225 781 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Gso11g3225 781 Coils Coil 172 192 - -
Gso11g3225 781 Gene3D - 352 519 IPR023393 -
Gso11g3225 781 Pfam START domain 304 522 IPR002913 GO:0008289
Gso11g3225 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 778 IPR042160 -
Gso11g3225 781 SMART HOX_1 107 170 IPR001356 GO:0003677
Gso11g3225 781 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 63 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3225 Gso-Chr11 48001690 48008845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3225 50 781 Homeobox Transcription Factor Family AT1G05230 79.376 0.0 1175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso11g3225 START 2.6e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3225 K09338 - gmx:100809556 1479.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1642 12 40003738 40010981 Gso11g3225 11 48001690 48008845 GST
Gso11g3225 11 48001690 48008845 Gso12g0822 12 8727081 8734901 PCT
Gso11g3225 11 48001690 48008845 Gso6g2495 6 46724713 46733005 PCT
Gso12g0822 12 8727081 8734901 Gso11g3225 11 48001690 48008845 PCT
Gso6g2495 6 46724713 46733005 Gso11g3225 11 48001690 48008845 PCT