Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3220 ATGAACGACCTTCTCACTGATTCATTTGTTGGCGAGGCTAGTAATGGCCAGCCTTCTAGACAAAGTGATATTGAAATGGGACAGGTTCCGAGAAGCAACTCCGATATGGGAATGGAAGCTTTTAATAAACAGATCCATGAGGCTGATAAACAAATCGATAAGCTTTCCGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCCAAAGCTGTCACAAAAGCATCTTCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGGGTCAAAACAAAAATAGAGGCTATAAGCAGAGATAACCTATCCAATAGACAAAAGCCTGGATGTGAGAAGGGAACAGGTGTTGACAGAGCAAGAATGAATATGACAAATGCCTTGACTAAAAAATTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTTACGGGAACTAGGCCAGATGATGAGACAATTGATCGCCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGATTGTAAACACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATTGAAAGTCAGGTGACAAACGCAACTGATCATGTGAGACTGGGAAACGACGCTCTACAAACTGCAAAAAGTTTGCAAAAGAAGTCAAGGAAATGCATGATGATTTCCATTATATTGATCCTCGTCATTGCCATCATTATCGTACTCTCTGTTTTGAAACCATGGAAGAAGTGA 918 0.3965 MNDLLTDSFVGEASNGQPSRQSDIEMGQVPRSNSDMGMEAFNKQIHEADKQIDKLSVLLQKLKEANEESKAVTKASSMKAIKKRMEKDIDEVGKIAHGVKTKIEAISRDNLSNRQKPGCEKGTGVDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDRLIETGNSEQIFQRAILEAGRGQIVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVTNATDHVRLGNDALQTAKSLQKKSRKCMMISIILILVIAIIIVLSVLKPWKK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3220 305 MobiDBLite consensus disorder prediction 1 35 - -
Gso11g3220 305 CDD SynN 38 195 IPR006011 GO:0016020
Gso11g3220 305 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Gso11g3220 305 CDD SNARE_syntaxin1-like 207 269 - -
Gso11g3220 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Gso11g3220 305 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Gso11g3220 305 Gene3D - 202 301 - -
Gso11g3220 305 Coils Coil 38 75 - -
Gso11g3220 305 Gene3D - 33 162 - -
Gso11g3220 305 SMART SynN_4 33 159 IPR006011 GO:0016020
Gso11g3220 305 Pfam SNARE domain 244 296 IPR000727 -
Gso11g3220 305 PANTHER SYNTAXIN 10 299 IPR045242 -
Gso11g3220 305 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 299 - -
Gso11g3220 305 SMART tSNARE_6 203 270 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3220 Gso-Chr11 47940732 47947943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3220 1 303 SNARE and Associated Proteins AT3G03800 62.046 9.00e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3220 K08486 - gmx:100807404 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1647 12 40069119 40076241 Gso11g3220 11 47940732 47947943 GST