Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3217 ATGAGAGTTGCCATTGTCACAAGAACAAACCAATTTTTCATTGAAGTAGGTACCCAAGAAACAGTTGCAGCAATCAAGAGGAAAATAGAACAAATCCTGGGGATTCCAGTGCCCTCACAAATCCTAACAGTTTCTGGGTGGGAACTATTGGATGGATTAGACATGGAAGATTACCCAATAGTGACTGAAGGTACAAAAATTGACCTCACCATCAAACCAGTGGAGCCACACCCTAGCAAAATGCAAATCACAGTAAAATTTTCAGCTAGAAAGTTTAACATTGAGGTGGACAGAACCGACACTGTTCGCAGCTTGAAGGAAAAAATTCACATCATTGATAGCACACCCATCAAAAGAATGACATTATACTTTTCAGGGAGAGAATTGGATGAAGATTTTAGAATCTTGAGTGAGTATGGCATACGTGAATTTTCTGAGATTGTTGTGTTCCTCAAGCCCTTGAATCGATCGAGAGAAGAACCTCCCACAAGGAAGTTAAGCTTGGTAGTACAAACTTCCTCTAGTTTGCTTAATGGTGCCACCATTCCACTGGAGATGAGAGATGCAAGCACAGTCAGTGACTTGAAGCAGTTACTGATAAGCAGAAAAATTCTGCCAGTTGATGACTATTTGTTCATACACAAGCAGAGGATCATGCGTGATAGCTGTAGCCTCAGGTGGCATGGAGTTGAAGATGGAGACTGTCTCTATGTGTTTAAGGGGACAGTTAGTCGCAGTGGGTATGCATGA 750 0.4173 MRVAIVTRTNQFFIEVGTQETVAAIKRKIEQILGIPVPSQILTVSGWELLDGLDMEDYPIVTEGTKIDLTIKPVEPHPSKMQITVKFSARKFNIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGRELDEDFRILSEYGIREFSEIVVFLKPLNRSREEPPTRKLSLVVQTSSSLLNGATIPLEMRDASTVSDLKQLLISRKILPVDDYLFIHKQRIMRDSCSLRWHGVEDGDCLYVFKGTVSRSGYA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3217 249 ProSiteProfiles Ubiquitin domain profile. 81 152 IPR000626 GO:0005515
Gso11g3217 249 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 247 - -
Gso11g3217 249 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Gso11g3217 249 SMART ubq_7 170 241 IPR000626 GO:0005515
Gso11g3217 249 SMART ubq_7 1 72 IPR000626 GO:0005515
Gso11g3217 249 SMART ubq_7 81 152 IPR000626 GO:0005515
Gso11g3217 249 Pfam Ubiquitin family 8 72 IPR000626 GO:0005515
Gso11g3217 249 Pfam Ubiquitin family 83 153 IPR000626 GO:0005515
Gso11g3217 249 Pfam Ubiquitin family 177 238 IPR000626 GO:0005515
Gso11g3217 249 SUPERFAMILY Ubiquitin-like 74 160 IPR029071 -
Gso11g3217 249 Gene3D - 80 152 - -
Gso11g3217 249 Gene3D - 1 72 - -
Gso11g3217 249 Gene3D - 174 239 - -
Gso11g3217 249 CDD Ubl_ubiquitin_like 3 69 - -
Gso11g3217 249 SUPERFAMILY Ubiquitin-like 2 74 IPR029071 -
Gso11g3217 249 ProSiteProfiles Ubiquitin domain profile. 166 238 IPR000626 GO:0005515
Gso11g3217 249 SUPERFAMILY Ubiquitin-like 176 241 IPR029071 -
Gso11g3217 249 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 247 - -
Gso11g3217 249 CDD Ubl_ubiquitin_like 176 239 - -
Gso11g3217 249 CDD Ubl_ubiquitin_like 83 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3217 81 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.247 6.96e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3217 - - gmx:100781557 483.796